Variant report

Variant	rs6732279
Chromosome Location	chr2:128089540-128089541
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:128089106..128091546-chr2:128093212..128095621,2	K562	blood:
2	chr2:128087491..128090123-chr2:128092000..128094792,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10209678	0.86[ASN][1000 genomes]
rs10803585	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10928761	0.89[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11886231	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11890187	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11901355	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12052483	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12463451	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12465955	0.89[ASN][1000 genomes]
rs12477214	0.93[ASN][1000 genomes]
rs12479003	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12622436	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12623948	0.87[ASN][1000 genomes]
rs12692064	0.86[ASN][1000 genomes]
rs12989081	0.93[ASN][1000 genomes]
rs12989154	0.96[ASN][1000 genomes]
rs12991062	0.87[ASN][1000 genomes]
rs12991768	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13029237	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1566823	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17015199	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850689	0.93[ASN][1000 genomes]
rs2090574	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2174270	0.89[ASN][1000 genomes]
rs2276583	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2896980	0.94[ASN][1000 genomes]
rs3088374	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34832797	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35293119	0.94[ASN][1000 genomes]
rs35328149	0.87[ASN][1000 genomes]
rs3768866	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4150407	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs4150441	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4150454	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4150477	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4150495	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4150496	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4233583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4233584	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4497825	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4662575	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4662578	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4662580	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4662711	0.84[ASN][1000 genomes]
rs4662717	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4662722	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4662725	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55905117	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55998967	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58475809	0.87[ASN][1000 genomes]
rs59566504	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62157549	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62157555	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62160261	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6430935	0.88[ASN][1000 genomes]
rs6712213	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6712446	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6712551	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6731176	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6761447	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71414745	0.81[ASN][1000 genomes]
rs7568261	0.96[ASN][1000 genomes]
rs7580658	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7587639	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7589451	0.95[ASN][1000 genomes]
rs867304	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9636237	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9789510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128059400-128109600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:128059800-128093000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:128061600-128098200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:128061800-128096800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:128062400-128094000	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr2:128062800-128098000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:128063400-128098400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:128063600-128091800	Strong transcription	Placenta	Placenta
9	chr2:128064200-128090000	Weak transcription	Psoas Muscle	Psoas
10	chr2:128065000-128100200	Weak transcription	Stomach Mucosa	stomach
11	chr2:128066400-128090600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr2:128068200-128092200	Weak transcription	Pancreas	Pancrea
13	chr2:128069000-128117000	Weak transcription	Small Intestine	intestine
14	chr2:128072200-128090000	Weak transcription	Colonic Mucosa	Colon
15	chr2:128072200-128098200	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr2:128072200-128101400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr2:128072200-128109600	Weak transcription	Esophagus	oesophagus
18	chr2:128072200-128111800	Weak transcription	K562	blood
19	chr2:128072600-128112000	Weak transcription	NHEK	skin
20	chr2:128074800-128106800	Weak transcription	Spleen	Spleen
21	chr2:128076000-128095400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr2:128076600-128102800	Weak transcription	Hela-S3	cervix
23	chr2:128077000-128090000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:128077000-128094000	Weak transcription	Gastric	stomach
25	chr2:128077000-128116200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr2:128077200-128122800	Weak transcription	Aorta	Aorta
27	chr2:128078200-128093400	Strong transcription	Dnd41	blood
28	chr2:128078400-128097400	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr2:128078600-128096200	Strong transcription	Fetal Thymus	thymus
30	chr2:128078600-128096400	Strong transcription	Fetal Intestine Large	intestine
31	chr2:128078600-128109600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr2:128078800-128092400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr2:128078800-128095600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr2:128078800-128096800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr2:128078800-128105400	Weak transcription	HSMMtube	muscle
36	chr2:128079200-128094800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr2:128079200-128096600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr2:128079200-128097000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr2:128079200-128098000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:128079400-128107800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr2:128079600-128099000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr2:128079800-128090000	Weak transcription	Brain Angular Gyrus	brain
43	chr2:128079800-128091200	Weak transcription	Brain Hippocampus Middle	brain
44	chr2:128079800-128091800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr2:128079800-128092800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr2:128079800-128097600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr2:128079800-128098400	Weak transcription	Fetal Brain Male	brain
48	chr2:128079800-128101200	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr2:128079800-128101800	Weak transcription	HMEC	breast
50	chr2:128079800-128107600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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