Variant report

Variant	rs6736682
Chromosome Location	chr2:184076365-184076366
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NUP35-2	chr2:184075920-184078579	NONHSAT075944

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10497620	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs10497624	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11893835	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894287	0.85[AFR][1000 genomes]
rs11904393	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316842	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1400132	1.00[CHB][hapmap]
rs1462534	0.84[ASN][1000 genomes]
rs16823723	0.84[ASN][1000 genomes]
rs16824018	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs16824025	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs16824033	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs16824048	0.84[ASN][1000 genomes]
rs16824058	0.84[ASN][1000 genomes]
rs16824059	0.84[ASN][1000 genomes]
rs16824095	0.84[ASN][1000 genomes]
rs16824106	0.84[ASN][1000 genomes]
rs17706149	0.84[ASN][1000 genomes]
rs17757704	0.95[ASN][1000 genomes]
rs17757841	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1997486	0.81[ASN][1000 genomes]
rs2017742	0.81[ASN][1000 genomes]
rs2176232	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2368373	0.81[ASN][1000 genomes]
rs2675094	0.89[ASN][1000 genomes]
rs2887234	0.86[CHB][hapmap]
rs3748881	0.84[ASN][1000 genomes]
rs3748882	0.84[ASN][1000 genomes]
rs3762476	0.84[ASN][1000 genomes]
rs4467235	0.97[ASN][1000 genomes]
rs4606882	0.84[ASN][1000 genomes]
rs4666611	0.84[ASN][1000 genomes]
rs4666612	0.84[ASN][1000 genomes]
rs4666620	0.84[ASN][1000 genomes]
rs4666890	0.84[ASN][1000 genomes]
rs4666892	0.84[ASN][1000 genomes]
rs4666896	0.87[ASN][1000 genomes]
rs4666898	0.87[ASN][1000 genomes]
rs56402172	0.81[ASN][1000 genomes]
rs58281223	0.85[AFR][1000 genomes]
rs59876240	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66717549	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72892678	0.81[ASN][1000 genomes]
rs72892681	0.81[ASN][1000 genomes]
rs72892682	0.81[ASN][1000 genomes]
rs72892683	0.81[ASN][1000 genomes]
rs72892688	0.81[ASN][1000 genomes]
rs72892690	0.81[ASN][1000 genomes]
rs72894514	0.81[ASN][1000 genomes]
rs72894558	0.81[ASN][1000 genomes]
rs72896596	0.84[ASN][1000 genomes]
rs72896599	0.84[ASN][1000 genomes]
rs72898521	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72898571	0.95[ASN][1000 genomes]
rs7591252	0.84[ASN][1000 genomes]
rs9333281	0.81[ASN][1000 genomes]
rs987607	0.94[ASN][1000 genomes]
rs987608	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1005281	chr2:183803173-184093877	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv875486	chr2:184016627-184095979	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184047800-184078400	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:184049000-184078000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:184050400-184091600	Weak transcription	Psoas Muscle	Psoas
4	chr2:184055600-184076400	Weak transcription	Primary T cells from cord blood	blood
5	chr2:184062800-184080600	Weak transcription	K562	blood
6	chr2:184072000-184076400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:184072200-184082800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:184072600-184094000	Weak transcription	HSMM	muscle
9	chr2:184073000-184084600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:184074800-184079200	Weak transcription	Dnd41	blood
11	chr2:184074800-184080600	Weak transcription	A549	lung

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