Variant report

Variant	rs6737752
Chromosome Location	chr2:182024031-182024032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10177832	0.81[EUR][1000 genomes]
rs10194025	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10194653	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10195880	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10204666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10207887	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1040228	0.86[ASN][1000 genomes]
rs10930960	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1107786	0.88[CHB][hapmap]
rs11889566	0.81[EUR][1000 genomes]
rs11902472	0.85[ASN][1000 genomes]
rs11902868	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12151685	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs13008615	0.81[EUR][1000 genomes]
rs13032688	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13035390	0.81[EUR][1000 genomes]
rs1401124	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1401125	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1401126	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs1401128	0.91[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap]
rs1401131	0.91[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap]
rs1401135	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1518452	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1518455	0.91[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap]
rs1518456	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs17668214	0.91[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap]
rs2048976	0.91[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap]
rs2048977	0.91[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap]
rs2090558	0.91[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap]
rs2368189	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2368190	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs3792220	0.91[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap]
rs4077213	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs4077924	0.86[ASN][1000 genomes]
rs4233789	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4233791	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4233792	0.84[EUR][1000 genomes]
rs4233795	0.82[EUR][1000 genomes]
rs4233796	0.82[EUR][1000 genomes]
rs4233797	0.81[EUR][1000 genomes]
rs4254470	0.84[EUR][1000 genomes]
rs4374330	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4432411	0.85[EUR][1000 genomes]
rs4441426	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4441427	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4441428	0.85[EUR][1000 genomes]
rs4441429	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4462758	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4473348	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4511685	0.84[EUR][1000 genomes]
rs4539757	0.82[EUR][1000 genomes]
rs4563182	0.85[JPT][hapmap]
rs4666662	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs4666663	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs4666668	0.91[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap]
rs4666669	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs4666719	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4666722	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4666723	0.85[EUR][1000 genomes]
rs4666725	0.84[EUR][1000 genomes]
rs4666991	0.82[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap]
rs4666996	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs4666997	0.82[CHB][hapmap]
rs4667004	0.91[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap]
rs4667020	0.91[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap]
rs4667041	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs4667082	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4667141	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4667142	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4667158	0.81[EUR][1000 genomes]
rs4667162	0.81[EUR][1000 genomes]
rs6433880	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs6433891	0.82[ASN][1000 genomes]
rs6433893	0.86[ASN][1000 genomes]
rs6433897	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6433901	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6704963	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs6717590	0.84[EUR][1000 genomes]
rs6723271	0.84[EUR][1000 genomes]
rs6730853	0.83[EUR][1000 genomes]
rs6731523	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs6734603	0.82[EUR][1000 genomes]
rs6747525	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs6747566	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6747797	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6750529	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355504	0.81[EUR][1000 genomes]
rs7355566	0.81[EUR][1000 genomes]
rs7355692	0.82[EUR][1000 genomes]
rs7370006	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs7370048	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs7371259	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs7424715	0.85[EUR][1000 genomes]
rs7565130	0.86[ASN][1000 genomes]
rs7575113	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7578218	0.82[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap]
rs908736	0.91[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv459954	chr2:181975252-182040293	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv583910	chr2:181975252-182040293	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182014400-182027600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr2:182021200-182026000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:182021200-182026200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr2:182021200-182027600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:182021200-182027600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr2:182021200-182030000	Weak transcription	Thymus	Thymus
7	chr2:182021400-182026600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr2:182021800-182025600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr2:182021800-182027400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr2:182021800-182027800	Weak transcription	Dnd41	blood
11	chr2:182022000-182027000	Weak transcription	Primary T cells from cord blood	blood
12	chr2:182022000-182027800	Weak transcription	Fetal Thymus	thymus

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