Variant report

Variant	rs673846
Chromosome Location	chr4:20480750-20480751
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13137693	0.82[EUR][1000 genomes]
rs13151540	0.82[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs1902845	0.82[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs474495	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475942	0.84[EUR][1000 genomes]
rs491795	0.82[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs60079457	0.81[EUR][1000 genomes]
rs609114	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs625614	0.83[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs669852	0.83[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs7691135	0.83[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs9998254	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878741	chr4:20440476-20486230	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv878742	chr4:20473799-20527864	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20449600-20486000	Weak transcription	Fetal Lung	lung
2	chr4:20464600-20532600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:20465000-20495000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:20466600-20481800	Weak transcription	NHDF-Ad	bronchial
5	chr4:20466600-20484800	Weak transcription	Osteobl	bone
6	chr4:20466800-20489200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:20466800-20495000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:20480000-20480800	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr4:20480200-20493400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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