Variant report

Variant	rs67387007
Chromosome Location	chr15:56146732-56146733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56146576..56148212-chr15:56149809..56151716,2	K562	blood:
2	chr15:56146351..56148212-chr15:56150216..56152289,2	K562	blood:
3	chr15:56138547..56140362-chr15:56145607..56147733,2	MCF-7	breast:

Extended variants
information (count: 159 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs10459621	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10518824	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10518828	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10518830	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10518831	0.90[AFR][1000 genomes]
rs11071233	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12437795	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12437882	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12438522	0.81[AMR][1000 genomes]
rs12439407	0.81[AMR][1000 genomes]
rs12439762	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12440230	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12440431	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12440476	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12441416	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12441843	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12441869	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12442940	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12442946	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12442990	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12442991	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12591210	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12591621	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12591733	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12592018	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12593387	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12593593	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12594420	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12913186	0.86[ASN][1000 genomes]
rs1553739	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16976618	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16976626	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16976635	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16976638	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16976644	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16976646	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16976648	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16976652	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16976654	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1863757	0.84[ASN][1000 genomes]
rs1863758	0.86[ASN][1000 genomes]
rs1912405	0.83[ASN][1000 genomes]
rs1912406	0.81[ASN][1000 genomes]
rs1912407	0.83[ASN][1000 genomes]
rs1973571	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2175236	0.83[ASN][1000 genomes]
rs2271288	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2303579	0.86[ASN][1000 genomes]
rs2303580	0.86[ASN][1000 genomes]
rs2414448	0.86[ASN][1000 genomes]
rs2414449	0.80[ASN][1000 genomes]
rs2438128	0.86[ASN][1000 genomes]
rs34136305	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs35329525	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs35617453	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs5024063	0.88[AMR][1000 genomes]
rs55747940	0.85[AFR][1000 genomes]
rs55765028	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55924913	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55926597	0.85[AFR][1000 genomes]
rs55959977	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs55990153	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56109567	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs56112958	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs56220861	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56327716	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs56796048	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56890666	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs56914055	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57195161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57208793	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs57273249	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs57365614	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs57472279	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs58300472	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58703788	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs58855534	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs58879329	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59733635	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60201187	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60755985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60760787	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61261303	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61423234	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61444949	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61558945	0.85[AFR][1000 genomes]
rs62043794	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62043803	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043804	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043805	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62043806	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043807	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043808	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043814	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043851	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62043853	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62043855	0.85[ASN][1000 genomes]
rs6493824	0.86[ASN][1000 genomes]
rs66463411	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs66493820	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs66503769	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs66540128	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs66571152	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs66700079	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs66735896	0.85[AFR][1000 genomes]
rs66846453	0.81[AMR][1000 genomes]
rs67121306	0.81[AMR][1000 genomes]
rs67144308	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs67192017	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs67229420	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs67240909	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs67242621	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs67312536	0.81[AMR][1000 genomes]
rs67313474	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs67480957	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs67497103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67519209	0.90[AFR][1000 genomes]
rs67585628	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs67620259	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs67777171	0.85[AFR][1000 genomes]
rs67790265	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs67850372	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs67927048	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs67944364	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs67955420	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs67958775	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67974830	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs68033152	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs68052665	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs68170026	0.84[AFR][1000 genomes]
rs7162927	0.86[ASN][1000 genomes]
rs7175317	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7181148	0.81[AMR][1000 genomes]
rs7181534	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72732263	0.88[AMR][1000 genomes]
rs72732265	0.95[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72732270	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72732290	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72732295	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72732302	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72734323	0.85[AFR][1000 genomes]
rs72734327	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72734329	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72734338	0.81[AMR][1000 genomes]
rs72734341	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72734345	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72734352	0.81[AMR][1000 genomes]
rs72734353	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72734354	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72734364	0.81[AMR][1000 genomes]
rs73418178	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs925257	0.85[AFR][1000 genomes]
rs952533	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9744758	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9806347	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv976866	chr15:56145370-56147851	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56115400-56148000	Weak transcription	Ovary	ovary
2	chr15:56116600-56150600	Weak transcription	Right Ventricle	heart
3	chr15:56116800-56162200	Weak transcription	Fetal Heart	heart
4	chr15:56118600-56151000	Weak transcription	Fetal Kidney	kidney
5	chr15:56118800-56147000	Weak transcription	Gastric	stomach
6	chr15:56118800-56149200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:56118800-56151400	Weak transcription	Brain Anterior Caudate	brain
8	chr15:56120000-56147800	Weak transcription	HepG2	liver
9	chr15:56120800-56147200	Weak transcription	Thymus	Thymus
10	chr15:56121200-56147200	Weak transcription	Spleen	Spleen
11	chr15:56122600-56152000	Weak transcription	Fetal Thymus	thymus
12	chr15:56122600-56153800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr15:56122600-56154800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr15:56122600-56156600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:56122800-56147200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:56122800-56147600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:56122800-56156000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:56127200-56155400	Strong transcription	Osteobl	bone
19	chr15:56127200-56155800	Strong transcription	HSMM	muscle
20	chr15:56129000-56157400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:56129600-56147400	Weak transcription	Esophagus	oesophagus
22	chr15:56132000-56164800	Weak transcription	Small Intestine	intestine
23	chr15:56133000-56152600	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:56133600-56154400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr15:56134200-56150600	Weak transcription	Left Ventricle	heart
26	chr15:56134400-56147400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:56134400-56150000	Weak transcription	Psoas Muscle	Psoas
28	chr15:56134400-56156600	Weak transcription	Colon Smooth Muscle	Colon
29	chr15:56134800-56151800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:56135000-56156600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr15:56135200-56152600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr15:56135400-56147800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr15:56138200-56161800	Weak transcription	K562	blood
34	chr15:56138400-56149000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:56138600-56154400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr15:56138800-56152800	Weak transcription	GM12878-XiMat	blood
37	chr15:56139400-56155400	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr15:56139600-56153200	Strong transcription	NHEK	skin
39	chr15:56140000-56147800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:56140000-56148800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:56140000-56149200	Strong transcription	NH-A	brain
42	chr15:56140000-56152000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:56140200-56149000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:56140200-56155600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:56140600-56147200	Weak transcription	Lung	lung
46	chr15:56140600-56147400	Weak transcription	Fetal Lung	lung
47	chr15:56140600-56147600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:56140600-56148800	Strong transcription	A549	lung
49	chr15:56141200-56147800	Weak transcription	Adipose Nuclei	Adipose
50	chr15:56141800-56150800	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links