Variant report

Variant	rs6740067
Chromosome Location	chr2:128156366-128156367
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:128156066..128157658-chr2:128157783..128160601,2	K562	blood:
2	chr2:128144095..128150105-chr2:128153920..128160111,11	MCF-7	breast:
3	chr2:128138507..128141090-chr2:128155679..128157523,2	K562	blood:
4	chr2:128153413..128157536-chr2:128163810..128168101,4	K562	blood:
5	chr2:128154427..128157643-chr2:128157781..128161017,3	K562	blood:
6	chr2:128155478..128158047-chr2:128160860..128162623,2	K562	blood:
7	chr2:128143860..128148648-chr2:128154163..128162464,14	MCF-7	breast:
8	chr2:128143318..128152182-chr2:128154033..128162255,17	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PROC-1	chr2:128155523-128158156	ENSG00000236682
2	lnc-PROC-1	chr2:128155523-128158154	NONHSAT074152

No data

Variant related genes	Relation type
ENSG00000169967	Chromatin interaction
ENSG00000236682	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10169028	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178188	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10195774	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10206392	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10211382	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221754	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10439213	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10439214	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10451530	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1128974	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1129121	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385611	0.80[ASN][1000 genomes]
rs13406313	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13421256	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13424947	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13429050	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13431911	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1607437	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271026	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755310	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4150448	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150487	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150507	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4150512	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4150515	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55826634	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56276844	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57011781	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57547812	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57878090	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59283013	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59306090	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6710541	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6711086	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6727155	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740368	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6743815	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6750648	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72956480	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72956485	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964335	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72964338	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964344	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964352	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964361	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7564189	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584829	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7586961	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs878461	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs908787	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9808452	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128146000-128158400	Weak transcription	Ovary	ovary
2	chr2:128146400-128165200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:128146600-128157200	Weak transcription	Fetal Stomach	stomach
4	chr2:128146600-128162600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:128146800-128158200	Weak transcription	Small Intestine	intestine
6	chr2:128150400-128165000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:128150600-128158200	Weak transcription	Fetal Thymus	thymus
8	chr2:128152000-128158200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr2:128152400-128158200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:128152600-128165800	Weak transcription	Aorta	Aorta
11	chr2:128155000-128156800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:128155000-128156800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr2:128155000-128157000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:128155000-128157000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:128155000-128157000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr2:128155000-128160400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr2:128155200-128156400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:128155200-128156400	Enhancers	HSMM	muscle
19	chr2:128155200-128156400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr2:128155200-128156400	Enhancers	NHEK	skin
21	chr2:128155200-128156800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:128155200-128156800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:128155200-128156800	Enhancers	Pancreas	Pancrea
24	chr2:128155200-128156800	Enhancers	Stomach Mucosa	stomach
25	chr2:128155200-128156800	Enhancers	HSMMtube	muscle
26	chr2:128155200-128157000	Enhancers	Psoas Muscle	Psoas
27	chr2:128155200-128158200	Enhancers	Fetal Intestine Large	intestine
28	chr2:128155200-128158400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr2:128155200-128158400	Enhancers	Fetal Intestine Small	intestine
30	chr2:128155400-128156400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr2:128155400-128156400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr2:128155400-128156400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr2:128155400-128156400	Enhancers	NH-A	brain
34	chr2:128155400-128156400	Enhancers	NHDF-Ad	bronchial
35	chr2:128155400-128157200	Enhancers	HMEC	breast
36	chr2:128155400-128160200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr2:128155600-128156400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr2:128155600-128156400	Enhancers	HUVEC	blood vessel
39	chr2:128155600-128156800	Enhancers	Lung	lung
40	chr2:128155600-128158400	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr2:128155800-128164800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr2:128156000-128157000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr2:128156000-128158000	Weak transcription	Fetal Lung	lung
44	chr2:128156000-128158200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr2:128156000-128158200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr2:128156000-128158400	Weak transcription	Colonic Mucosa	Colon
47	chr2:128156000-128162200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr2:128156000-128163800	Enhancers	A549	lung
49	chr2:128156200-128156400	Enhancers	Muscle Satellite Cultured Cells	--
50	chr2:128156200-128156400	Enhancers	Osteobl	bone

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