Variant report

Variant	rs6740336
Chromosome Location	chr2:33807860-33807861
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:33806729..33808347-chr2:33822065..33825043,2	MCF-7	breast:
2	chr2:33805623..33808519-chr2:33811628..33813454,2	MCF-7	breast:
3	chr2:33803592..33806367-chr2:33806693..33808611,2	MCF-7	breast:
4	chr2:33800902..33802491-chr2:33806551..33808271,2	K562	blood:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10166099	0.81[CEU][hapmap]
rs10168254	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10173763	0.80[CEU][hapmap];0.86[JPT][hapmap]
rs10197783	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs11066	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1375198	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1375199	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1448559	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2367811	1.00[CEU][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs3023	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6708570	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6718639	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6757234	0.91[JPT][hapmap]
rs723241	0.91[JPT][hapmap]
rs723242	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6740336	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33757200-33809800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:33762200-33809800	Weak transcription	Aorta	Aorta
3	chr2:33766800-33809800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:33776000-33809800	Weak transcription	Pancreas	Pancrea
5	chr2:33778400-33808600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:33780000-33808600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr2:33780400-33808600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr2:33780400-33809200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:33781200-33809800	Weak transcription	Gastric	stomach
10	chr2:33784000-33809800	Weak transcription	Right Ventricle	heart
11	chr2:33784000-33810000	Weak transcription	Fetal Intestine Small	intestine
12	chr2:33784200-33809800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:33784600-33808400	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:33786000-33808600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:33786400-33808800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr2:33788400-33808800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:33788600-33808600	Weak transcription	Psoas Muscle	Psoas
18	chr2:33789400-33809400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr2:33789600-33808600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr2:33790800-33808600	Weak transcription	Adipose Nuclei	Adipose
21	chr2:33791400-33808600	Weak transcription	Left Ventricle	heart
22	chr2:33797600-33810000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr2:33799800-33808800	Weak transcription	A549	lung
24	chr2:33800800-33809800	Weak transcription	NHEK	skin
25	chr2:33801200-33808800	Weak transcription	Liver	Liver
26	chr2:33802200-33809800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:33802200-33823600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:33802400-33809200	Weak transcription	Brain Anterior Caudate	brain
29	chr2:33802400-33809400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:33802800-33808600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:33802800-33809400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr2:33802800-33809600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr2:33802800-33809800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:33802800-33809800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr2:33803000-33808600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr2:33803000-33808600	Weak transcription	Brain Substantia Nigra	brain
37	chr2:33803000-33809000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr2:33803000-33809600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr2:33803000-33809800	Weak transcription	Ovary	ovary
40	chr2:33803000-33810000	Weak transcription	Brain Angular Gyrus	brain
41	chr2:33803200-33808200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr2:33803200-33808600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr2:33803200-33809000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr2:33803400-33809800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr2:33803600-33809800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr2:33803800-33809800	Weak transcription	Esophagus	oesophagus
47	chr2:33803800-33822200	Weak transcription	Right Atrium	heart
48	chr2:33804600-33809000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr2:33804600-33809000	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr2:33804600-33809200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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