Variant report

Variant	rs6742878
Chromosome Location	chr2:182019856-182019857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10173932	1.00[AMR][1000 genomes]
rs10186141	1.00[AMR][1000 genomes]
rs10200804	1.00[AMR][1000 genomes]
rs55660649	0.86[EUR][1000 genomes]
rs55699373	1.00[EUR][1000 genomes]
rs55854201	1.00[EUR][1000 genomes]
rs55934533	1.00[EUR][1000 genomes]
rs56066931	1.00[EUR][1000 genomes]
rs56184714	1.00[EUR][1000 genomes]
rs56208112	1.00[EUR][1000 genomes]
rs56227816	0.86[EUR][1000 genomes]
rs56252601	0.86[EUR][1000 genomes]
rs56298450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56329092	1.00[EUR][1000 genomes]
rs56347806	1.00[EUR][1000 genomes]
rs6706756	1.00[CEU][hapmap]
rs6741600	0.93[EUR][1000 genomes]
rs6745557	1.00[EUR][1000 genomes]
rs6755739	0.86[EUR][1000 genomes]
rs73976824	1.00[EUR][1000 genomes]
rs73976835	0.87[EUR][1000 genomes]
rs7578322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7585125	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv459954	chr2:181975252-182040293	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv583910	chr2:181975252-182040293	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181999600-182022000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:182010800-182021000	Weak transcription	Fetal Thymus	thymus
3	chr2:182011400-182020800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr2:182014400-182027600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr2:182017800-182020800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr2:182017800-182020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr2:182018600-182020800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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