Variant report

Variant	rs6743815
Chromosome Location	chr2:128122285-128122286
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10169028	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178188	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10195774	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10206392	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10211382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221754	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10439213	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10439214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10451530	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1128974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1129121	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385611	0.86[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs13406313	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13421256	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13424947	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13429050	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13431911	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1604817	0.85[JPT][hapmap]
rs1607437	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755310	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4150448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150507	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4150512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4150515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4536600	0.85[JPT][hapmap]
rs55826634	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56276844	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57011781	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57547812	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57878090	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59283013	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59306090	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6710541	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6711086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6727155	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740067	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740368	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6750648	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72956480	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72956485	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964335	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72964338	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964344	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964352	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964361	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7564189	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584829	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7586961	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs878461	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes]
rs908787	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9808452	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128077200-128122800	Weak transcription	Aorta	Aorta
2	chr2:128093200-128122800	Weak transcription	Fetal Kidney	kidney
3	chr2:128102600-128122400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:128105600-128127400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:128107000-128122800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr2:128107200-128122800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:128107800-128140200	Weak transcription	Gastric	stomach
8	chr2:128109600-128124600	Weak transcription	Stomach Mucosa	stomach
9	chr2:128109800-128123000	Weak transcription	Right Ventricle	heart
10	chr2:128109800-128134000	Weak transcription	Lung	lung
11	chr2:128110200-128127800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr2:128112200-128126400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:128112600-128127200	Weak transcription	Primary B cells from cord blood	blood
14	chr2:128116200-128122400	Weak transcription	Brain Germinal Matrix	brain
15	chr2:128116800-128127600	Weak transcription	Thymus	Thymus
16	chr2:128117200-128122800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:128117200-128123400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr2:128117400-128122800	Weak transcription	Small Intestine	intestine
19	chr2:128117400-128123000	Weak transcription	Psoas Muscle	Psoas
20	chr2:128117600-128125800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr2:128117800-128122800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr2:128118000-128123000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr2:128119400-128122600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr2:128119600-128122400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr2:128119600-128123800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr2:128119600-128124600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr2:128120600-128122800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr2:128120600-128122800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr2:128120600-128123400	Enhancers	Brain Hippocampus Middle	brain
30	chr2:128120800-128122800	Weak transcription	Liver	Liver
31	chr2:128120800-128122800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr2:128120800-128124800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr2:128120800-128139200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:128120800-128142000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr2:128121000-128122800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr2:128121000-128123200	Weak transcription	Primary T cells from cord blood	blood
37	chr2:128121000-128123400	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr2:128121000-128127600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr2:128121200-128122800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr2:128121200-128123000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr2:128121200-128135200	Weak transcription	Osteobl	bone
42	chr2:128121400-128123400	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr2:128121400-128123400	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr2:128121400-128123400	Enhancers	Spleen	Spleen
45	chr2:128121400-128123600	Enhancers	Primary B cells from peripheral blood	blood
46	chr2:128121400-128123600	Enhancers	Fetal Heart	heart
47	chr2:128121400-128123800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr2:128121600-128122400	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr2:128121600-128122400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr2:128121600-128123200	Enhancers	Brain Anterior Caudate	brain

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