Variant report

Variant	rs6744620
Chromosome Location	chr2:182008302-182008303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10153661	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1018326	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189776	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10209191	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10930961	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10930962	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12615545	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12615998	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12616042	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12619531	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12620692	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12622612	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12693272	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13010713	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13393689	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13405121	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1543177	0.93[ASN][1000 genomes]
rs1568257	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1996501	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2368187	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4233790	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4401183	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4439920	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4441425	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4444479	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4496291	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4514841	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4522566	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4524093	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4563183	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4666715	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4666716	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4666717	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4667083	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4667114	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4667115	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4667118	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4667127	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4667128	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4667129	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4667130	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4667135	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56987708	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6433894	0.95[ASN][1000 genomes]
rs66912914	0.95[ASN][1000 genomes]
rs6729682	0.82[ASN][1000 genomes]
rs6731186	0.95[ASN][1000 genomes]
rs6735551	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6740034	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7355617	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7355751	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7561880	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7580110	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7588217	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7593597	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9678124	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv459954	chr2:181975252-182040293	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv583910	chr2:181975252-182040293	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181999600-182022000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:182003400-182009200	Enhancers	Dnd41	blood
3	chr2:182004800-182008800	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr2:182005800-182009200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:182006800-182008400	Weak transcription	Fetal Thymus	thymus
6	chr2:182006800-182008600	Weak transcription	Thymus	Thymus
7	chr2:182007600-182008400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr2:182007600-182008600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr2:182007600-182009200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr2:182007600-182009600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr2:182007600-182010000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:182007600-182010000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr2:182007600-182010000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr2:182007600-182010200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:182007800-182008600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr2:182007800-182009400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr2:182007800-182011400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr2:182008000-182011400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:182008200-182009200	Enhancers	Primary T killer memory cells from peripheral blood	blood

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