Variant report

Variant	rs67455183
Chromosome Location	chr8:10145925-10145926
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10090440	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17151697	0.86[EUR][1000 genomes]
rs17151699	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17151763	0.80[EUR][1000 genomes]
rs17708090	0.83[EUR][1000 genomes]
rs2009619	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28611339	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28870492	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2952176	0.88[ASN][1000 genomes]
rs2952184	0.81[EUR][1000 genomes]
rs2952251	0.88[ASN][1000 genomes]
rs2952257	0.80[ASN][1000 genomes]
rs2975635	0.91[ASN][1000 genomes]
rs2975649	0.80[ASN][1000 genomes]
rs56220175	0.90[ASN][1000 genomes]
rs61456761	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6601426	0.83[EUR][1000 genomes]
rs66666973	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6994060	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7014570	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1028650	chr8:10101815-10178537	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10134200-10147600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr8:10144200-10150600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr8:10144400-10149800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:10144400-10150600	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:10144400-10167000	Weak transcription	Right Ventricle	heart
6	chr8:10145600-10150800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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