Variant report

Variant	rs6752263
Chromosome Location	chr2:33539923-33539924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs12104905	1.00[AMR][1000 genomes]
rs12105049	1.00[AMR][1000 genomes]
rs12105569	1.00[AMR][1000 genomes]
rs1454377	1.00[AMR][1000 genomes]
rs17012645	1.00[AMR][1000 genomes]
rs17012647	1.00[AMR][1000 genomes]
rs17012677	1.00[AMR][1000 genomes]
rs17012993	1.00[AMR][1000 genomes]
rs17038528	1.00[AMR][1000 genomes]
rs17038533	1.00[AMR][1000 genomes]
rs3845776	1.00[AMR][1000 genomes]
rs55676641	1.00[AMR][1000 genomes]
rs56191261	1.00[AMR][1000 genomes]
rs57040194	1.00[AMR][1000 genomes]
rs57043920	1.00[AMR][1000 genomes]
rs57555315	1.00[AMR][1000 genomes]
rs58019979	1.00[AMR][1000 genomes]
rs58248415	1.00[AMR][1000 genomes]
rs58447746	1.00[AMR][1000 genomes]
rs59291317	1.00[AMR][1000 genomes]
rs60690063	1.00[AMR][1000 genomes]
rs60756139	1.00[AMR][1000 genomes]
rs61050968	1.00[AMR][1000 genomes]
rs61154196	1.00[AMR][1000 genomes]
rs61163843	1.00[AMR][1000 genomes]
rs61332576	1.00[AMR][1000 genomes]
rs6706960	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6707278	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6710588	1.00[AMR][1000 genomes]
rs6719885	1.00[AMR][1000 genomes]
rs6722904	1.00[YRI][hapmap]
rs6724967	1.00[AMR][1000 genomes]
rs6725045	1.00[AMR][1000 genomes]
rs6736870	1.00[AMR][1000 genomes]
rs6739497	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6741450	1.00[AMR][1000 genomes]
rs73924181	1.00[AMR][1000 genomes]
rs73924183	1.00[AMR][1000 genomes]
rs73924186	1.00[AMR][1000 genomes]
rs73924192	1.00[AMR][1000 genomes]
rs73924195	1.00[AMR][1000 genomes]
rs73924197	1.00[AMR][1000 genomes]
rs73925003	1.00[AMR][1000 genomes]
rs73925009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73925011	1.00[AMR][1000 genomes]
rs73925681	1.00[AMR][1000 genomes]
rs73925695	1.00[AMR][1000 genomes]
rs73925697	1.00[AMR][1000 genomes]
rs73925698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73925700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73926609	1.00[AMR][1000 genomes]
rs73927363	1.00[AMR][1000 genomes]
rs73927504	1.00[AMR][1000 genomes]
rs73927505	1.00[AMR][1000 genomes]
rs73927506	1.00[AMR][1000 genomes]
rs73927507	1.00[AMR][1000 genomes]
rs73927508	1.00[AMR][1000 genomes]
rs73929408	1.00[AMR][1000 genomes]
rs73929409	1.00[AMR][1000 genomes]
rs73929412	1.00[AMR][1000 genomes]
rs73929413	1.00[AMR][1000 genomes]
rs73929415	1.00[AMR][1000 genomes]
rs957131	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	nsv873791	chr2:33489975-33586776	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv1012967	chr2:33533340-33638312	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv535627	chr2:33533340-33638312	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33492400-33547400	Weak transcription	Fetal Intestine Small	intestine
2	chr2:33517200-33545000	Weak transcription	Fetal Kidney	kidney
3	chr2:33517200-33545800	Weak transcription	Fetal Lung	lung
4	chr2:33517200-33546400	Weak transcription	Brain Angular Gyrus	brain
5	chr2:33517800-33543400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr2:33523400-33545200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:33523600-33546200	Weak transcription	K562	blood
8	chr2:33523800-33550600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:33524200-33546600	Weak transcription	Small Intestine	intestine
10	chr2:33527800-33540000	Weak transcription	Placenta	Placenta
11	chr2:33529000-33541400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr2:33529600-33546400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr2:33529800-33540200	Weak transcription	Left Ventricle	heart
14	chr2:33529800-33546600	Weak transcription	Psoas Muscle	Psoas
15	chr2:33529800-33561000	Weak transcription	HUVEC	blood vessel
16	chr2:33529800-33609400	Weak transcription	Right Ventricle	heart
17	chr2:33530000-33543000	Weak transcription	Colon Smooth Muscle	Colon
18	chr2:33531800-33540400	Weak transcription	Liver	Liver
19	chr2:33532200-33540000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr2:33533400-33542800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:33535600-33544600	Weak transcription	NHLF	lung
22	chr2:33537400-33545800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr2:33537800-33540400	Enhancers	HMEC	breast
24	chr2:33538400-33540400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr2:33538400-33541000	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr2:33538400-33541800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:33538400-33543200	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr2:33538400-33545600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:33538400-33545800	Strong transcription	Osteobl	bone
30	chr2:33538600-33540600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr2:33538600-33541600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr2:33538600-33541800	Weak transcription	NHDF-Ad	bronchial
33	chr2:33538800-33541600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:33538800-33542600	Weak transcription	Ovary	ovary
35	chr2:33539000-33541000	Strong transcription	Fetal Stomach	stomach
36	chr2:33539000-33542600	Weak transcription	Lung	lung
37	chr2:33539000-33544800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr2:33539400-33540000	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr2:33539400-33540000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr2:33539400-33540000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr2:33539400-33540200	Enhancers	NHEK	skin
42	chr2:33539400-33542000	Weak transcription	Esophagus	oesophagus
43	chr2:33539400-33542600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr2:33539600-33540600	Genic enhancers	Fetal Heart	heart
45	chr2:33539600-33541000	Strong transcription	Aorta	Aorta
46	chr2:33539600-33545600	Weak transcription	Fetal Muscle Leg	muscle
47	chr2:33539800-33541000	Strong transcription	Stomach Smooth Muscle	stomach
48	chr2:33539800-33543600	Strong transcription	NH-A	brain

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