Variant report
| Variant | rs6753227 |
|---|---|
| Chromosome Location | chr2:212649648-212649649 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11897075 | 1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs56005945 | 1.00[ASN][1000 genomes] |
| rs57828323 | 1.00[ASN][1000 genomes] |
| rs58905892 | 1.00[ASN][1000 genomes] |
| rs59605575 | 1.00[ASN][1000 genomes] |
| rs62182981 | 1.00[ASN][1000 genomes] |
| rs6733874 | 1.00[ASN][1000 genomes] |
| rs73069331 | 1.00[ASN][1000 genomes] |
| rs73069379 | 1.00[ASN][1000 genomes] |
| rs73085038 | 1.00[ASN][1000 genomes] |
| rs73085039 | 1.00[ASN][1000 genomes] |
| rs73085065 | 1.00[ASN][1000 genomes] |
| rs73085068 | 1.00[ASN][1000 genomes] |
| rs7569623 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7593089 | 1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9784129 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34128 | chr2:212581485-212857122 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv875784 | chr2:212639948-212761152 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
