Variant report

Variant	rs67534321
Chromosome Location	chr3:143470269-143470270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16854224	1.00[ASN][1000 genomes]
rs16854227	1.00[ASN][1000 genomes]
rs2069040	1.00[ASN][1000 genomes]
rs57468639	0.84[EUR][1000 genomes]
rs58187430	1.00[ASN][1000 genomes]
rs58306502	1.00[ASN][1000 genomes]
rs58518314	1.00[ASN][1000 genomes]
rs58881945	1.00[ASN][1000 genomes]
rs58936162	0.97[EUR][1000 genomes]
rs60468477	1.00[ASN][1000 genomes]
rs67785207	1.00[ASN][1000 genomes]
rs73009477	1.00[ASN][1000 genomes]
rs73154722	0.94[EUR][1000 genomes]
rs73154727	0.97[EUR][1000 genomes]
rs7616384	1.00[ASN][1000 genomes]
rs7628206	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv877567	chr3:143438124-143478454	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143450800-143488600	Weak transcription	Ovary	ovary
2	chr3:143457200-143488600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:143458000-143494400	Weak transcription	Psoas Muscle	Psoas
4	chr3:143465000-143490600	Weak transcription	Esophagus	oesophagus
5	chr3:143468400-143470400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr3:143468400-143470400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr3:143468800-143474400	Enhancers	Fetal Lung	lung
8	chr3:143469000-143470600	Enhancers	Primary T cells from cord blood	blood
9	chr3:143469000-143470600	Enhancers	Brain Angular Gyrus	brain
10	chr3:143469000-143470800	Enhancers	Brain Cingulate Gyrus	brain
11	chr3:143469000-143471800	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:143469200-143471000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:143469200-143472400	Enhancers	Brain Substantia Nigra	brain
14	chr3:143469400-143470600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr3:143469800-143470400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr3:143469800-143470400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr3:143469800-143470600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:143469800-143470600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:143469800-143470600	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr3:143469800-143470800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr3:143469800-143471200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr3:143469800-143472600	Enhancers	Brain Anterior Caudate	brain
23	chr3:143469800-143473600	Enhancers	Fetal Thymus	thymus
24	chr3:143470000-143470400	Enhancers	Brain Hippocampus Middle	brain
25	chr3:143470000-143470600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:143470000-143470800	Enhancers	Lung	lung
27	chr3:143470000-143470800	Enhancers	NHLF	lung
28	chr3:143470000-143471000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:143470000-143471400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr3:143470000-143471400	Flanking Active TSS	Dnd41	blood
31	chr3:143470000-143471600	Enhancers	Primary B cells from peripheral blood	blood
32	chr3:143470000-143472800	Enhancers	Fetal Stomach	stomach
33	chr3:143470000-143473200	Enhancers	Thymus	Thymus
34	chr3:143470000-143474800	Weak transcription	Right Atrium	heart
35	chr3:143470200-143470600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr3:143470200-143470600	Enhancers	Colon Smooth Muscle	Colon
37	chr3:143470200-143471000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr3:143470200-143471000	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr3:143470200-143471200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr3:143470200-143471600	Enhancers	Primary B cells from cord blood	blood
41	chr3:143470200-143472000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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