Variant report

Variant	rs6754237
Chromosome Location	chr2:213531809-213531810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10171052	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179457	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179622	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10180242	0.81[EUR][1000 genomes]
rs10185470	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10186885	0.81[EUR][1000 genomes]
rs10193213	0.81[EUR][1000 genomes]
rs10195898	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10204755	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10205609	0.81[EUR][1000 genomes]
rs10210112	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13383234	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13384047	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13384253	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13384610	0.91[AFR][1000 genomes]
rs13400391	0.81[EUR][1000 genomes]
rs13400701	1.00[ASN][1000 genomes]
rs13401993	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13402051	0.92[EUR][1000 genomes]
rs13402119	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13404602	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13404790	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405155	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13415082	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13418175	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418296	0.92[EUR][1000 genomes]
rs13418412	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418742	1.00[EUR][1000 genomes]
rs13424220	1.00[ASN][1000 genomes]
rs13424239	1.00[EUR][1000 genomes]
rs13426180	0.81[EUR][1000 genomes]
rs16849091	1.00[CHB][hapmap]
rs1987801	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054614	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs28794520	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs28852185	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28860549	1.00[ASN][1000 genomes]
rs4331450	1.00[ASN][1000 genomes]
rs4574061	1.00[ASN][1000 genomes]
rs56159667	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56164335	0.81[EUR][1000 genomes]
rs56314123	1.00[ASN][1000 genomes]
rs62187972	1.00[ASN][1000 genomes]
rs6435718	1.00[ASN][1000 genomes]
rs6435720	1.00[ASN][1000 genomes]
rs6720790	1.00[ASN][1000 genomes]
rs72933024	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933056	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72933076	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72937326	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72937336	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72937359	0.81[EUR][1000 genomes]
rs72937369	0.91[AFR][1000 genomes]
rs72937379	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72949047	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72949055	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7585872	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7591655	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213529600-213532800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:213531000-213532600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:213531200-213547800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:213531800-213532800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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