Variant report

Variant	rs6754566
Chromosome Location	chr2:37675247-37675248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12712533	0.92[ASN][1000 genomes]
rs12987182	0.95[EUR][1000 genomes]
rs13002028	0.85[EUR][1000 genomes]
rs13014680	0.90[EUR][1000 genomes]
rs13035644	0.91[EUR][1000 genomes]
rs17020669	0.82[EUR][1000 genomes]
rs2373106	0.91[EUR][1000 genomes]
rs2373107	0.91[EUR][1000 genomes]
rs34105303	0.88[EUR][1000 genomes]
rs34652606	0.88[EUR][1000 genomes]
rs34658454	0.90[EUR][1000 genomes]
rs6726898	0.98[ASN][1000 genomes]
rs71437580	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7568035	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37670000-37678400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:37672800-37676600	Weak transcription	Aorta	Aorta
3	chr2:37674600-37676600	Weak transcription	HSMM	muscle
4	chr2:37674800-37683600	Weak transcription	Psoas Muscle	Psoas
5	chr2:37675200-37675400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:37675200-37675400	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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