Variant report

Variant	rs6754623
Chromosome Location	chr2:210742895-210742896
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10175169	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs13424532	0.94[AFR][1000 genomes]
rs16843910	1.00[ASW][hapmap]
rs16843914	1.00[ASW][hapmap]
rs2159748	0.94[AFR][1000 genomes]
rs2215626	1.00[ASW][hapmap]
rs6435539	1.00[ASW][hapmap]
rs7608699	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1004426	chr2:210709999-211001680	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210682000-210769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:210733200-210791400	Weak transcription	Brain Angular Gyrus	brain
3	chr2:210735400-210769400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:210737800-210769400	Weak transcription	Brain Anterior Caudate	brain
5	chr2:210737800-210772400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:210739400-210744200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:210739600-210744200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:210741200-210743000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:210741600-210761000	Weak transcription	Fetal Brain Female	brain
10	chr2:210742200-210743400	Weak transcription	NHEK	skin
11	chr2:210742400-210758000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:210742600-210761000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:210742600-210798000	Weak transcription	Brain Germinal Matrix	brain
14	chr2:210742800-210743000	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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