Variant report

Variant	rs6755975
Chromosome Location	chr2:11866376-11866377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13384037	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs13390952	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
4	nsv580973	chr2:11864946-11898931	Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11863400-11866800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:11864400-11867400	Enhancers	Fetal Brain Male	brain
3	chr2:11865600-11867400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:11865800-11867400	Enhancers	Liver	Liver
5	chr2:11866000-11866600	Enhancers	Placenta	Placenta
6	chr2:11866000-11866800	Enhancers	Fetal Muscle Trunk	muscle
7	chr2:11866000-11867000	Bivalent Enhancer	K562	blood
8	chr2:11866000-11867200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr2:11866000-11867200	Enhancers	Fetal Brain Female	brain
10	chr2:11866000-11867200	Enhancers	Fetal Lung	lung
11	chr2:11866200-11866600	Enhancers	Right Atrium	heart
12	chr2:11866200-11866800	Enhancers	Fetal Stomach	stomach
13	chr2:11866200-11867200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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