Variant report

Variant	rs67562454
Chromosome Location	chr3:82018229-82018230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10433514	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11127748	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11127752	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11127753	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28815840	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4073255	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4280658	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4465964	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56911786	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58381411	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58400916	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58807347	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66764013	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67953383	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7635249	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7637713	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7644264	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7644824	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7646645	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7649233	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9816313	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9817940	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9818589	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9834349	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9841918	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9843081	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9871195	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9871912	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9872129	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9872204	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9872449	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9875526	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9877352	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9877471	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9882124	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82013200-82018600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:82014200-82018400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:82017200-82018400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:82017400-82018400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:82017400-82018600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:82017600-82018400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr3:82017600-82018400	Enhancers	Fetal Heart	heart
8	chr3:82018000-82018400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:82018200-82019000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:82018200-82023800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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