Variant report

Variant	rs675655
Chromosome Location	chr11:60020874-60020875
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1151119	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1285231	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs584469	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs588084	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs592894	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs599862	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs600550	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs603568	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs604085	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs612738	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs620612	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs621965	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs633463	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs650943	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs652303	0.83[EUR][1000 genomes]
rs657928	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs668287	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs670139	0.84[EUR][1000 genomes]
rs670854	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs673996	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs676309	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs678384	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs688460	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1053558	chr11:59979460-60061209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3435505	chr11:60006972-60051885	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60018200-60022000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:60018800-60021200	Enhancers	HUVEC	blood vessel
3	chr11:60019000-60021000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:60019000-60021200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr11:60019200-60021200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:60019400-60021200	Enhancers	Primary hematopoietic stem cells	blood
7	chr11:60019600-60021200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:60019800-60021000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:60020000-60023400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:60020400-60021000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr11:60020800-60021000	Enhancers	Primary B cells from peripheral blood	blood
12	chr11:60020800-60021000	Enhancers	Duodenum Mucosa	Duodenum

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