Variant report

Variant	rs67586210
Chromosome Location	chr7:138255948-138255949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10279876	1.00[ASN][1000 genomes]
rs11763093	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11769924	0.88[EUR][1000 genomes]
rs11773577	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707387	1.00[ASN][1000 genomes]
rs12707388	1.00[ASN][1000 genomes]
rs13230953	1.00[ASN][1000 genomes]
rs13231090	0.90[EUR][1000 genomes]
rs13231375	1.00[ASN][1000 genomes]
rs13234062	0.90[EUR][1000 genomes]
rs13242427	1.00[ASN][1000 genomes]
rs33935215	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34718165	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35558871	1.00[ASN][1000 genomes]
rs35674497	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918517	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467777	1.00[ASN][1000 genomes]
rs6467781	1.00[ASN][1000 genomes]
rs6970145	1.00[ASN][1000 genomes]
rs71541397	0.91[EUR][1000 genomes]
rs73164647	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7782453	1.00[ASN][1000 genomes]
rs7799818	1.00[ASN][1000 genomes]
rs7803989	1.00[ASN][1000 genomes]
rs7811152	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138235000-138257400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:138242600-138272400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:138250200-138273800	Weak transcription	Gastric	stomach
4	chr7:138250400-138267600	Weak transcription	NHLF	lung
5	chr7:138250400-138272000	Weak transcription	Small Intestine	intestine
6	chr7:138250400-138273000	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:138250600-138263800	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:138250600-138264000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:138250600-138270600	Weak transcription	Fetal Brain Male	brain
10	chr7:138250600-138271800	Weak transcription	Right Ventricle	heart
11	chr7:138250600-138273000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr7:138250600-138273400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:138250800-138258000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr7:138250800-138263800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:138250800-138264000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:138250800-138272400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:138250800-138272600	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr7:138250800-138273200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:138251000-138257800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:138251000-138264000	Weak transcription	Psoas Muscle	Psoas
21	chr7:138251000-138267800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr7:138251000-138272800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:138251000-138272800	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:138251200-138272800	Strong transcription	Fetal Thymus	thymus
25	chr7:138251200-138273000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr7:138251400-138256000	Weak transcription	HSMMtube	muscle
27	chr7:138251400-138259000	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr7:138251400-138259200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:138251400-138259600	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr7:138251400-138259600	Strong transcription	Duodenum Mucosa	Duodenum
31	chr7:138251400-138260600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr7:138251400-138262000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:138251400-138263600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr7:138251400-138266200	Strong transcription	Primary B cells from cord blood	blood
35	chr7:138251400-138270800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr7:138251400-138273000	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr7:138251400-138273000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:138251600-138256600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr7:138251600-138256600	Strong transcription	Fetal Muscle Trunk	muscle
40	chr7:138251600-138258800	Strong transcription	Placenta	Placenta
41	chr7:138251600-138265400	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr7:138251600-138273200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:138251800-138256400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
44	chr7:138251800-138258600	Weak transcription	Fetal Heart	heart
45	chr7:138251800-138259000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:138251800-138264000	Weak transcription	NHDF-Ad	bronchial
47	chr7:138252000-138256600	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr7:138252000-138259000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:138252000-138264000	Weak transcription	Colonic Mucosa	Colon
50	chr7:138252000-138266600	Strong transcription	Primary T cells from cord blood	blood

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