Variant report

Variant	rs6761345
Chromosome Location	chr2:184045582-184045583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:184045304..184046832-chr2:184050150..184052300,2	K562	blood:
2	chr2:184042932..184045706-chr2:184045938..184048137,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NCKAP1-3	chr2:184044986-184046018	NONHSAT075943

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10167583	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10194747	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11695124	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11900745	0.86[ASN][1000 genomes]
rs11901151	0.86[ASN][1000 genomes]
rs12990133	0.89[ASN][1000 genomes]
rs13033866	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1400131	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1462532	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1462533	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1829122	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1882444	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2368375	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2368377	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2368382	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2675045	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2675046	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2675082	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2675087	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2675090	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2675102	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2675108	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2705727	0.81[AFR][1000 genomes]
rs2705760	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2944353	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2952361	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2952363	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35898950	0.92[ASN][1000 genomes]
rs36116390	0.90[ASN][1000 genomes]
rs3791249	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4599071	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4666891	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4666894	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4666897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55865107	0.92[ASN][1000 genomes]
rs58605274	0.82[AMR][1000 genomes]
rs6705441	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6709729	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6713182	0.86[ASN][1000 genomes]
rs6714769	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6733392	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67391943	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6744793	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6754942	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6755399	0.92[ASN][1000 genomes]
rs67952840	0.89[ASN][1000 genomes]
rs68009860	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570918	0.92[ASN][1000 genomes]
rs7600893	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601311	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925806	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1005281	chr2:183803173-184093877	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv875486	chr2:184016627-184095979	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183990000-184050000	Weak transcription	Aorta	Aorta
2	chr2:183991000-184048400	Weak transcription	Brain Angular Gyrus	brain
3	chr2:183991000-184053400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:183991000-184055400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:183991400-184049600	Weak transcription	NHDF-Ad	bronchial
6	chr2:183992400-184047600	Weak transcription	Hela-S3	cervix
7	chr2:184009200-184048400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:184009400-184047200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr2:184015000-184062000	Weak transcription	Small Intestine	intestine
10	chr2:184018400-184047400	Weak transcription	Pancreas	Pancrea
11	chr2:184019000-184050000	Weak transcription	Gastric	stomach
12	chr2:184019000-184053400	Weak transcription	Placenta	Placenta
13	chr2:184026000-184054600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr2:184026000-184057600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:184026600-184058800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr2:184026800-184047400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr2:184027600-184057600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr2:184028600-184045600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr2:184029000-184047400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr2:184029200-184047200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr2:184029200-184047200	Weak transcription	HepG2	liver
22	chr2:184029200-184047400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr2:184029200-184047400	Weak transcription	HSMM	muscle
24	chr2:184029200-184050000	Weak transcription	HUVEC	blood vessel
25	chr2:184029200-184054800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr2:184029200-184062800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr2:184029400-184045800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr2:184029400-184047400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr2:184029400-184047400	Weak transcription	K562	blood
30	chr2:184029400-184050200	Weak transcription	Osteobl	bone
31	chr2:184029400-184053000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr2:184029600-184047200	Weak transcription	Primary B cells from cord blood	blood
33	chr2:184029600-184047400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr2:184030000-184047400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr2:184030400-184046000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr2:184031200-184045600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr2:184031200-184045600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr2:184031200-184047200	Weak transcription	GM12878-XiMat	blood
39	chr2:184031200-184047400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr2:184031200-184050200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr2:184031200-184057600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr2:184031400-184052800	Weak transcription	Fetal Thymus	thymus
43	chr2:184034200-184048800	Weak transcription	HMEC	breast
44	chr2:184034600-184045800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr2:184036800-184050200	Weak transcription	Spleen	Spleen
46	chr2:184037200-184047400	Weak transcription	NHEK	skin
47	chr2:184037600-184050000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr2:184037600-184050200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr2:184037600-184057600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr2:184040800-184048600	Weak transcription	Brain Substantia Nigra	brain

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