Variant report

Variant	rs6762005
Chromosome Location	chr3:78805282-78805283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12495127	0.85[ASN][1000 genomes]
rs13087237	0.85[ASN][1000 genomes]
rs1487139	0.90[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs1623449	0.85[ASN][1000 genomes]
rs162870	0.84[JPT][hapmap]
rs1840969	0.90[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs2304503	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs333481	0.84[ASN][1000 genomes]
rs333491	0.90[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs333495	0.90[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs35812135	0.99[ASN][1000 genomes]
rs365165	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs416551	0.90[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs444598	0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs510006	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9309818	0.85[ASN][1000 genomes]
rs9309819	0.84[JPT][hapmap]
rs9631512	0.85[ASN][1000 genomes]
rs9837982	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2753211	chr3:78784269-78809116	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78787400-78814800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:78798600-78810200	Weak transcription	Fetal Lung	lung
3	chr3:78802200-78810200	Weak transcription	Fetal Stomach	stomach
4	chr3:78803400-78806600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:78803600-78805800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:78803800-78806800	Weak transcription	Brain Germinal Matrix	brain
7	chr3:78803800-78814800	Weak transcription	NHDF-Ad	bronchial
8	chr3:78804000-78805800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:78804000-78806400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:78804000-78806400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:78804000-78806600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:78804200-78806400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:78804200-78806400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:78804400-78814400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:78804600-78805600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr3:78804600-78806600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:78804600-78806800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:78804600-78806800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:78804600-78807200	Weak transcription	Brain Angular Gyrus	brain
20	chr3:78804600-78808000	Weak transcription	Pancreas	Pancrea
21	chr3:78804800-78806400	Weak transcription	Brain Anterior Caudate	brain
22	chr3:78804800-78806400	Weak transcription	Brain Substantia Nigra	brain
23	chr3:78804800-78806600	Weak transcription	Brain Hippocampus Middle	brain
24	chr3:78804800-78806800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:78804800-78808200	Weak transcription	HepG2	liver

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