Variant report

Variant	rs6763573
Chromosome Location	chr3:69400762-69400763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv1800315	chr3:69374729-69414587	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69372200-69403800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:69389000-69400800	Weak transcription	Aorta	Aorta
3	chr3:69393400-69402600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:69394000-69403000	Weak transcription	HSMM	muscle
5	chr3:69397800-69406000	Weak transcription	HSMMtube	muscle
6	chr3:69400200-69400800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr3:69400200-69401000	Transcr. at gene 5' and 3'	HUVEC	blood vessel
8	chr3:69400200-69401000	Enhancers	NHEK	skin
9	chr3:69400200-69401800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr3:69400200-69402400	Enhancers	Brain Angular Gyrus	brain
11	chr3:69400200-69403400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:69400200-69405400	Enhancers	Brain Substantia Nigra	brain
13	chr3:69400400-69401200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr3:69400400-69401400	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr3:69400400-69401800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr3:69400400-69401800	Enhancers	Brain Cingulate Gyrus	brain
17	chr3:69400400-69401800	Enhancers	Fetal Thymus	thymus
18	chr3:69400400-69402200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr3:69400400-69403400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:69400400-69403400	Active TSS	Right Atrium	heart
21	chr3:69400400-69403400	Flanking Active TSS	Dnd41	blood
22	chr3:69400600-69400800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:69400600-69400800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:69400600-69400800	Flanking Active TSS	Brain Hippocampus Middle	brain
25	chr3:69400600-69400800	Enhancers	Thymus	Thymus
26	chr3:69400600-69401000	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr3:69400600-69401000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr3:69400600-69401200	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr3:69400600-69401400	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr3:69400600-69402200	Enhancers	Primary B cells from cord blood	blood
31	chr3:69400600-69402800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:69400600-69412800	Weak transcription	Esophagus	oesophagus

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