Variant report

Variant	rs6764861
Chromosome Location	chr3:155958216-155958217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10222673	0.85[CEU][hapmap];0.86[MEX][hapmap]
rs1120745	0.84[AMR][1000 genomes]
rs11713991	0.84[AMR][1000 genomes]
rs11915771	0.80[AMR][1000 genomes]
rs11915832	0.83[AMR][1000 genomes]
rs11922447	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs1391889	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs1391890	0.83[CEU][hapmap];0.82[AMR][1000 genomes]
rs1499051	0.82[AMR][1000 genomes]
rs1499055	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499056	0.85[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.81[AMR][1000 genomes]
rs1546229	0.85[CEU][hapmap];0.84[AMR][1000 genomes]
rs17170	0.81[CEU][hapmap]
rs1814218	0.88[CEU][hapmap]
rs1909373	0.84[AMR][1000 genomes]
rs1909374	0.82[AMR][1000 genomes]
rs1909375	0.82[AMR][1000 genomes]
rs1909376	0.84[AMR][1000 genomes]
rs2017971	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4333049	0.84[AMR][1000 genomes]
rs4453801	0.86[MEX][hapmap]
rs4505650	0.83[CEU][hapmap];0.83[AMR][1000 genomes]
rs4530487	0.91[MEX][hapmap];0.82[AMR][1000 genomes]
rs4577423	0.82[ASW][hapmap];0.82[CEU][hapmap];0.82[GIH][hapmap];0.86[MEX][hapmap]
rs4634068	0.86[MEX][hapmap]
rs4680239	0.82[CEU][hapmap]
rs4680244	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.84[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4680248	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4680249	0.85[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes]
rs6441042	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs6441050	0.85[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes]
rs6441051	0.81[AMR][1000 genomes]
rs6788238	0.82[AMR][1000 genomes]
rs728382	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs7373565	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611194	0.80[AMR][1000 genomes]
rs7620808	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7633871	0.83[AMR][1000 genomes]
rs7634800	0.84[AMR][1000 genomes]
rs7638421	0.82[AMR][1000 genomes]
rs963226	0.88[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs963227	1.00[CEU][hapmap];0.87[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9864967	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs9866991	0.85[CEU][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6764861	SLC33A1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155952000-155959200	Weak transcription	Aorta	Aorta
2	chr3:155958200-155959000	Enhancers	HUVEC	blood vessel

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