Variant report

Variant	rs6766859
Chromosome Location	chr3:138055136-138055137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1002766	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11710280	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12107581	0.86[EUR][1000 genomes]
rs12490350	0.83[EUR][1000 genomes]
rs1564407	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1564408	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2054468	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2169973	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35219044	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3755751	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3773752	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3773758	0.90[EUR][1000 genomes]
rs3773759	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3816730	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4678260	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4678261	0.87[EUR][1000 genomes]
rs4678407	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4678408	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4678409	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4678410	0.87[EUR][1000 genomes]
rs4678411	0.83[EUR][1000 genomes]
rs4678412	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4678415	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4678417	0.83[EUR][1000 genomes]
rs6439804	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6439805	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6439806	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439807	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67559768	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6769236	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6769261	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6782449	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6784989	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6790398	0.90[EUR][1000 genomes]
rs6802211	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs730158	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs731632	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs751357	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7615658	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7626388	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7626424	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7637666	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7639809	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7639850	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9289559	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs940233	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9825697	0.83[EUR][1000 genomes]
rs9845672	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9846198	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9846223	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9854465	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv528349	chr3:138025396-138132393	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1821595	chr3:138043128-138055402	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1796956	chr3:138051423-138122781	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1848610	chr3:138051423-138133412	Bivalent Enhancer Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138048600-138057800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:138049000-138056600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:138049200-138055200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:138049200-138055400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:138050600-138056200	Weak transcription	HSMM	muscle
6	chr3:138051800-138055400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:138053800-138057600	Weak transcription	Pancreas	Pancrea
8	chr3:138054400-138056000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:138054400-138056800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:138054400-138057200	Weak transcription	Ovary	ovary
11	chr3:138054400-138057400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:138054600-138055800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:138054800-138056000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr3:138055000-138055400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:138055000-138055600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:138055000-138057000	Enhancers	HUES6 Cell Line	embryonic stem cell

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