Variant report

Variant	rs6768673
Chromosome Location	chr3:81926191-81926192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs13314900	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13322916	0.93[CEU][hapmap]
rs13326721	1.00[CEU][hapmap]
rs1404296	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1851922	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1851924	0.86[EUR][1000 genomes]
rs1973802	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2315967	0.81[EUR][1000 genomes]
rs2316043	0.86[EUR][1000 genomes]
rs2680271	0.81[TSI][hapmap]
rs2680275	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2680276	0.93[CEU][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs2691082	0.82[EUR][1000 genomes]
rs28553548	0.87[EUR][1000 genomes]
rs28668209	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3772886	0.93[CEU][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs3772901	0.87[CEU][hapmap]
rs3849573	0.87[CEU][hapmap]
rs57555994	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59419728	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62265681	0.91[EUR][1000 genomes]
rs62267115	0.89[EUR][1000 genomes]
rs62267150	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6548778	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6776410	0.93[CEU][hapmap]
rs6778413	0.86[EUR][1000 genomes]
rs6785740	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6791629	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6798822	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6804453	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6804613	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6804697	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7611917	0.86[EUR][1000 genomes]
rs7623056	0.93[CEU][hapmap];0.88[TSI][hapmap]
rs7633528	0.91[EUR][1000 genomes]
rs7634830	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7635332	0.84[EUR][1000 genomes]
rs7644425	0.86[EUR][1000 genomes]
rs9812141	0.86[EUR][1000 genomes]
rs9812505	0.86[EUR][1000 genomes]
rs9813371	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9816203	0.91[EUR][1000 genomes]
rs9820490	0.88[EUR][1000 genomes]
rs9821222	0.81[EUR][1000 genomes]
rs9825400	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9826933	0.83[EUR][1000 genomes]
rs9827558	0.86[EUR][1000 genomes]
rs9831301	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9831360	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9833851	0.92[EUR][1000 genomes]
rs9835279	0.86[EUR][1000 genomes]
rs9838598	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9847076	0.87[CEU][hapmap]
rs9851559	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9863322	0.89[EUR][1000 genomes]
rs9870979	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871474	0.93[CEU][hapmap];0.88[TSI][hapmap]
rs9874754	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6768673	OGT	trans	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81914000-81927000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:81925600-81927000	Enhancers	Adipose Nuclei	Adipose
3	chr3:81925800-81926200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:81926000-81926400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:81926000-81926400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:81926000-81926400	Enhancers	NHDF-Ad	bronchial
7	chr3:81926000-81927600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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