Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13088575	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1491975	0.82[ASN][1000 genomes]
rs2172248	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4234322	0.93[ASN][1000 genomes]
rs4435614	0.81[EUR][1000 genomes]
rs4679830	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4680440	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4680442	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4680443	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6792496	0.80[EUR][1000 genomes]
rs6798252	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7610769	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7619322	0.84[ASN][1000 genomes]
rs7621591	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9289838	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9812989	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9817904	0.92[ASN][1000 genomes]
rs9824609	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9825817	0.82[EUR][1000 genomes]
rs9871952	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9873499	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9877298	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv877649	chr3:151147968-151236562	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151161600-151178600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:151163800-151170200	Weak transcription	Fetal Brain Male	brain
3	chr3:151167200-151170600	Weak transcription	Ovary	ovary
4	chr3:151168200-151169800	Strong transcription	Fetal Lung	lung

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