Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11709302	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11711662	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs13082754	0.96[CEU][hapmap]
rs1375521	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1375522	0.93[ASN][1000 genomes]
rs1473348	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2359786	0.81[AFR][1000 genomes]
rs6445655	0.95[CEU][hapmap]
rs6445657	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6777368	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6804196	0.95[CEU][hapmap]
rs731508	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7372585	0.91[ASN][1000 genomes]
rs7374435	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7426795	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7645545	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7653648	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs9817603	0.95[CEU][hapmap]
rs9826277	0.81[AFR][1000 genomes]
rs9843412	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9874831	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv817210	chr3:54365684-54511164	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3340964	chr3:54427737-54432360	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54425400-54428400	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:54426600-54429000	Weak transcription	Brain Substantia Nigra	brain
3	chr3:54427200-54428200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
4	chr3:54427400-54427800	Enhancers	Pancreas	Pancrea
5	chr3:54427600-54427800	Bivalent Enhancer	Right Ventricle	heart

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