Variant report

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6765090	0.82[AFR][1000 genomes]
rs9825038	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23200600-23201400	Enhancers	GM12878-XiMat	blood
2	chr3:23201000-23201800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:23201000-23202000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:23201000-23202800	Enhancers	HUVEC	blood vessel
5	chr3:23201000-23203800	Enhancers	NHLF	lung
6	chr3:23201000-23204200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:23201200-23201600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:23201200-23201600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:23201200-23201600	Enhancers	Colon Smooth Muscle	Colon
10	chr3:23201200-23201800	Enhancers	HMEC	breast
11	chr3:23201200-23202000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:23201200-23202000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:23201200-23202000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:23201200-23202000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:23201200-23202000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr3:23201200-23202000	Enhancers	HSMM	muscle
17	chr3:23201200-23202000	Enhancers	NHEK	skin
18	chr3:23201200-23202400	Enhancers	HSMMtube	muscle
19	chr3:23201200-23203200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:23201200-23203400	Enhancers	Osteobl	bone
21	chr3:23201200-23203800	Enhancers	NH-A	brain
22	chr3:23201200-23203800	Enhancers	NHDF-Ad	bronchial

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