Variant report

Variant	rs6772937
Chromosome Location	chr3:46583873-46583874
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46582873..46586773-chr3:46587066..46590997,5	K562	blood:
2	chr3:46582368..46586773-chr3:46586902..46591684,9	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11130092	1.00[JPT][hapmap];0.94[YRI][hapmap]
rs12486039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2176861	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34924380	0.93[ASN][1000 genomes]
rs35303057	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4682820	0.93[ASN][1000 genomes]
rs62247799	0.93[ASN][1000 genomes]
rs6791703	0.82[CEU][hapmap]
rs6800163	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808142	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7374675	1.00[JPT][hapmap]
rs7430431	1.00[JPT][hapmap];0.94[YRI][hapmap]
rs9311391	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv876737	chr3:46569721-46595431	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46544800-46599400	Weak transcription	Right Atrium	heart
2	chr3:46549200-46585400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:46556400-46591000	Weak transcription	Psoas Muscle	Psoas
4	chr3:46558400-46591000	Weak transcription	Gastric	stomach
5	chr3:46567200-46586000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:46569000-46584200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:46571600-46587000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:46578400-46599200	Weak transcription	HSMMtube	muscle
9	chr3:46578800-46586200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:46579200-46587800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:46579600-46584200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:46579800-46586200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:46580200-46584400	Weak transcription	Placenta	Placenta
14	chr3:46580200-46586200	Weak transcription	Liver	Liver
15	chr3:46580600-46584400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:46580600-46584400	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:46580600-46584400	Weak transcription	Left Ventricle	heart
18	chr3:46580600-46586200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:46580800-46586400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:46581000-46584400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr3:46581200-46584000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:46581200-46584400	Enhancers	Primary B cells from peripheral blood	blood
23	chr3:46581200-46584400	Enhancers	Primary T cells fromperipheralblood	blood
24	chr3:46581200-46584800	Enhancers	Thymus	Thymus
25	chr3:46581200-46599200	Weak transcription	Fetal Heart	heart
26	chr3:46581400-46584200	Enhancers	Primary B cells from cord blood	blood
27	chr3:46581400-46594400	Enhancers	Fetal Thymus	thymus
28	chr3:46581600-46584400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:46581600-46584600	Enhancers	GM12878-XiMat	blood
30	chr3:46581600-46584800	Enhancers	Primary T cells from cord blood	blood
31	chr3:46581600-46584800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr3:46581600-46586000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:46581600-46591000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr3:46581600-46599400	Weak transcription	Spleen	Spleen
35	chr3:46581800-46587200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr3:46581800-46587600	Enhancers	Dnd41	blood
37	chr3:46582400-46584200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr3:46582400-46585200	Weak transcription	Right Ventricle	heart
39	chr3:46582400-46587200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr3:46583000-46584600	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr3:46583000-46584600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr3:46583000-46584600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr3:46583000-46584800	Enhancers	K562	blood
44	chr3:46583000-46588000	Strong transcription	Ovary	ovary
45	chr3:46583200-46584800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:46583200-46585000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:46583200-46590600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr3:46583400-46584000	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr3:46583400-46584200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr3:46583400-46587200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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