Variant report

Variant	rs6774050
Chromosome Location	chr3:143419252-143419253
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1242054	0.81[CHB][hapmap]
rs1345170	0.81[CHB][hapmap]
rs1534162	0.81[CHB][hapmap]
rs16853999	0.81[CHB][hapmap]
rs16854008	0.81[CHB][hapmap]
rs2121777	0.81[CHB][hapmap]
rs4839649	0.81[CHB][hapmap]
rs4839650	0.90[CHB][hapmap]
rs4839651	0.81[CHB][hapmap]
rs6440181	0.81[CHB][hapmap]
rs6774032	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6786893	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6786896	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv877566	chr3:143397740-143421221	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143370800-143420800	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143394200-143470200	Weak transcription	Primary B cells from cord blood	blood
3	chr3:143417200-143419400	Enhancers	Brain Hippocampus Middle	brain
4	chr3:143417600-143419400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:143418000-143431200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:143418600-143419400	Enhancers	Spleen	Spleen
7	chr3:143418800-143426600	Weak transcription	Fetal Lung	lung
8	chr3:143418800-143428600	Weak transcription	Brain Angular Gyrus	brain
9	chr3:143419000-143426800	Weak transcription	Psoas Muscle	Psoas
10	chr3:143419200-143419800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:143419200-143419800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
12	chr3:143419200-143419800	Enhancers	Esophagus	oesophagus
13	chr3:143419200-143419800	Enhancers	HMEC	breast
14	chr3:143419200-143428400	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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