Variant report

Variant	rs6774199
Chromosome Location	chr3:25379231-25379232
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11709169	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709623	0.80[ASN][1000 genomes]
rs11709732	0.96[ASN][1000 genomes]
rs11714481	0.80[ASN][1000 genomes]
rs11717848	0.96[ASN][1000 genomes]
rs11718046	0.96[ASN][1000 genomes]
rs11718836	0.96[ASN][1000 genomes]
rs11721271	0.94[ASN][1000 genomes]
rs1436251	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1483830	0.83[AFR][1000 genomes]
rs1483837	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17016187	1.00[JPT][hapmap]
rs17016204	0.92[EUR][1000 genomes]
rs17016260	0.96[ASN][1000 genomes]
rs17588596	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs1905465	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1984597	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2164476	0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs4681017	0.84[AFR][1000 genomes]
rs4681047	0.84[AFR][1000 genomes]
rs4681048	0.82[AFR][1000 genomes]
rs57697446	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6550961	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6550962	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6550963	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6550964	0.81[AFR][1000 genomes]
rs6550966	0.96[ASN][1000 genomes]
rs6771956	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615094	0.96[ASN][1000 genomes]
rs7615609	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623030	0.96[ASN][1000 genomes]
rs7649070	0.85[ASN][1000 genomes]
rs9818293	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9822411	1.00[JPT][hapmap]
rs9837851	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9848513	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9877461	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25377200-25384000	Weak transcription	Fetal Lung	lung
2	chr3:25377400-25379800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:25378200-25380800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:25378400-25379600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:25378600-25380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:25379000-25382600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:25379200-25380800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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