Variant report
| Variant | rs677459 |
|---|---|
| Chromosome Location | chr1:194052514-194052515 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10801283 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10921484 | 0.90[EUR][1000 genomes] |
| rs10921488 | 0.81[EUR][1000 genomes] |
| rs10921489 | 0.92[EUR][1000 genomes] |
| rs10921492 | 0.94[EUR][1000 genomes] |
| rs12028846 | 0.91[EUR][1000 genomes] |
| rs12073039 | 0.85[EUR][1000 genomes] |
| rs12750617 | 0.90[EUR][1000 genomes] |
| rs12755187 | 0.92[EUR][1000 genomes] |
| rs1323088 | 0.97[EUR][1000 genomes] |
| rs1323089 | 0.97[EUR][1000 genomes] |
| rs13374626 | 0.90[EUR][1000 genomes] |
| rs1442422 | 0.96[EUR][1000 genomes] |
| rs1830680 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2197134 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2584258 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4657898 | 0.90[EUR][1000 genomes] |
| rs4657899 | 0.91[EUR][1000 genomes] |
| rs4657901 | 0.95[EUR][1000 genomes] |
| rs4657903 | 0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs488612 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.97[ASN][1000 genomes] |
| rs524329 | 0.80[AFR][1000 genomes] |
| rs527848 | 0.80[ASN][1000 genomes] |
| rs597957 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs632531 | 0.80[ASN][1000 genomes] |
| rs7521863 | 0.89[EUR][1000 genomes] |
| rs9943286 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008266 | chr1:193550185-194481053 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv872834 | chr1:193889533-194482304 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1001872 | chr1:194030479-194288016 | Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv872836 | chr1:194032486-194130204 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:194043800-194054000 | Weak transcription | Fetal Heart | heart |
| 2 | chr1:194052400-194053400 | Enhancers | Sigmoid Colon | Sigmoid Colon |
