Variant report

Variant	rs6775293
Chromosome Location	chr3:116015000-116015001
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11918762	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13073491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1563938	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16824799	1.00[CHB][hapmap]
rs17646052	1.00[CHB][hapmap]
rs1993733	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs2100807	0.80[ASN][1000 genomes]
rs34840522	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35300468	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35406989	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35910525	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4831092	0.80[ASN][1000 genomes]
rs4831093	1.00[CHB][hapmap]
rs55893774	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6438312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6809953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7639095	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7639424	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7645165	0.84[AFR][1000 genomes]
rs957783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9809878	0.82[CHB][hapmap]
rs9811136	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115997200-116017200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:116007600-116016800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:116009000-116018600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:116009200-116018200	Weak transcription	Brain Germinal Matrix	brain
5	chr3:116013600-116015000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:116014000-116015000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:116014200-116015000	Enhancers	Colon Smooth Muscle	Colon
8	chr3:116014200-116015200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:116014400-116015200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:116014400-116015200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:116014600-116016800	Weak transcription	Brain Anterior Caudate	brain
12	chr3:116014600-116016800	Weak transcription	Brain Substantia Nigra	brain
13	chr3:116014800-116016800	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:116014800-116016800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:116014800-116018000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:116014800-116018000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:116015000-116015400	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:116015000-116017800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:116015000-116018000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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