Variant report

Variant	rs67771121
Chromosome Location	chr11:17225796-17225797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17224733..17227563-chr11:17228503..17230689,3	K562	blood:
2	chr11:17147840..17149746-chr11:17225161..17227393,2	MCF-7	breast:
3	chr11:16964680..16966696-chr11:17223543..17226223,2	K562	blood:

Variant related genes	Relation type
ENSG00000011405	Chromatin interaction
ENSG00000070081	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10430892	1.00[EUR][1000 genomes]
rs10741723	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10832730	0.84[ASN][1000 genomes]
rs11024142	0.84[ASN][1000 genomes]
rs11024145	0.84[ASN][1000 genomes]
rs11024146	0.85[ASN][1000 genomes]
rs11024147	0.85[ASN][1000 genomes]
rs11024150	0.86[ASN][1000 genomes]
rs11024152	0.85[ASN][1000 genomes]
rs11024153	0.86[ASN][1000 genomes]
rs11024185	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024186	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024197	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11024199	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11024201	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024226	1.00[EUR][1000 genomes]
rs11024243	1.00[EUR][1000 genomes]
rs11024245	1.00[EUR][1000 genomes]
rs11024246	1.00[EUR][1000 genomes]
rs12225195	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12226898	0.83[ASN][1000 genomes]
rs12576590	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17847728	0.86[ASN][1000 genomes]
rs2302511	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4757499	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61555995	1.00[EUR][1000 genomes]
rs6416174	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6486349	0.84[ASN][1000 genomes]
rs6486350	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6486353	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7113011	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7122571	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7123825	0.84[ASN][1000 genomes]
rs7125085	0.86[AFR][1000 genomes]
rs7127204	0.93[ASN][1000 genomes]
rs72632986	0.85[ASN][1000 genomes]
rs72632987	0.84[ASN][1000 genomes]
rs72632988	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72632989	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632990	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929047	0.90[ASN][1000 genomes]
rs7934596	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7941165	0.86[ASN][1000 genomes]
rs7945756	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17167400-17228000	Weak transcription	Fetal Thymus	thymus
2	chr11:17184800-17228800	Weak transcription	Esophagus	oesophagus
3	chr11:17187000-17228000	Weak transcription	Colonic Mucosa	Colon
4	chr11:17187200-17226800	Weak transcription	Small Intestine	intestine
5	chr11:17191200-17227800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:17194200-17228000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:17197600-17228000	Weak transcription	Brain Angular Gyrus	brain
8	chr11:17203000-17228800	Weak transcription	Spleen	Spleen
9	chr11:17207400-17228200	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:17208800-17227400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:17209400-17228000	Weak transcription	K562	blood
12	chr11:17210400-17227400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:17210600-17228200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:17210600-17228200	Weak transcription	Brain Substantia Nigra	brain
15	chr11:17210800-17228000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:17212600-17228600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:17213000-17227400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:17213200-17228200	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:17214400-17228000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:17215200-17228000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr11:17215200-17228000	Weak transcription	Fetal Kidney	kidney
22	chr11:17216000-17226000	Weak transcription	Dnd41	blood
23	chr11:17216000-17226200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr11:17216000-17227400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:17216000-17227400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr11:17216000-17227400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:17216000-17227600	Weak transcription	Liver	Liver
28	chr11:17216000-17228000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:17216000-17228000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr11:17216000-17228000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:17216000-17228000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:17216000-17228000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:17216000-17228000	Weak transcription	Brain Anterior Caudate	brain
34	chr11:17216000-17228000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:17216000-17228000	Weak transcription	Fetal Brain Female	brain
36	chr11:17216000-17228000	Weak transcription	Fetal Lung	lung
37	chr11:17216000-17228000	Weak transcription	Placenta	Placenta
38	chr11:17216000-17228200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:17216000-17228200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:17216000-17228200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:17216000-17228200	Weak transcription	NH-A	brain
42	chr11:17216000-17228400	Weak transcription	Ovary	ovary
43	chr11:17216200-17227400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:17216200-17227600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:17216200-17227800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:17216200-17227800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:17216200-17228000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr11:17216200-17228000	Weak transcription	Primary T cells from cord blood	blood
49	chr11:17216200-17228000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:17216200-17228000	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links