Variant report
| Variant | rs6777368 |
|---|---|
| Chromosome Location | chr3:54452874-54452875 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11709302 | 0.84[ASN][1000 genomes] |
| rs11711662 | 0.84[EUR][1000 genomes] |
| rs1375521 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1375522 | 0.81[ASN][1000 genomes] |
| rs1473348 | 0.85[EUR][1000 genomes] |
| rs1992963 | 0.81[EUR][1000 genomes] |
| rs1992964 | 0.82[EUR][1000 genomes] |
| rs6445657 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6769553 | 0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs73089420 | 0.82[EUR][1000 genomes] |
| rs731508 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7374435 | 0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7426795 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7429237 | 0.81[EUR][1000 genomes] |
| rs7645545 | 0.85[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs7653648 | 0.84[EUR][1000 genomes] |
| rs9843412 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9864105 | 0.81[AFR][1000 genomes] |
| rs9874831 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9882285 | 0.82[EUR][1000 genomes] |
| rs9882299 | 0.81[EUR][1000 genomes] |
| rs9882553 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014595 | chr3:53944473-54846754 | Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv817210 | chr3:54365684-54511164 | Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv428084 | chr3:54404258-54742756 | Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1010348 | chr3:54435563-54508115 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:54452800-54453200 | Enhancers | Adipose Nuclei | Adipose |
