Variant report

Variant	rs6778172
Chromosome Location	chr3:98955351-98955352
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12485555	1.00[EUR][1000 genomes]
rs12496280	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13083919	0.87[AMR][1000 genomes]
rs1520687	0.87[AMR][1000 genomes]
rs2341804	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55744444	1.00[EUR][1000 genomes]
rs56995833	1.00[EUR][1000 genomes]
rs58986911	1.00[EUR][1000 genomes]
rs6761964	1.00[EUR][1000 genomes]
rs6769502	1.00[EUR][1000 genomes]
rs6769695	1.00[EUR][1000 genomes]
rs6769711	1.00[EUR][1000 genomes]
rs6778075	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6784261	1.00[EUR][1000 genomes]
rs6784333	1.00[EUR][1000 genomes]
rs6784460	1.00[EUR][1000 genomes]
rs6795575	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6806986	1.00[EUR][1000 genomes]
rs72932734	1.00[EUR][1000 genomes]
rs73858004	1.00[EUR][1000 genomes]
rs73858005	1.00[EUR][1000 genomes]
rs73858008	1.00[EUR][1000 genomes]
rs73858010	1.00[EUR][1000 genomes]
rs73858012	1.00[EUR][1000 genomes]
rs73858016	1.00[EUR][1000 genomes]
rs73858017	1.00[EUR][1000 genomes]
rs73858019	1.00[EUR][1000 genomes]
rs73858020	1.00[EUR][1000 genomes]
rs73858021	1.00[EUR][1000 genomes]
rs73858022	1.00[EUR][1000 genomes]
rs73858026	1.00[EUR][1000 genomes]
rs73859887	1.00[EUR][1000 genomes]
rs73859888	1.00[EUR][1000 genomes]
rs73859889	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1012359	chr3:98893510-98965013	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1798220	chr3:98894142-99020463	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv508230	chr3:98933987-98969536	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1012332	chr3:98944446-98969737	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1013972	chr3:98944446-98998206	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv999173	chr3:98944446-99007686	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1002786	chr3:98944446-99013936	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1014178	chr3:98945194-98965013	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98952200-98959000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:98952200-98959200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:98952800-98959200	Weak transcription	Osteobl	bone

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