Variant report

Variant	rs6778413
Chromosome Location	chr3:81934797-81934798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13314900	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs1524556	0.81[ASN][1000 genomes]
rs17019364	0.85[ASN][1000 genomes]
rs17019369	0.85[ASN][1000 genomes]
rs1851922	0.86[EUR][1000 genomes]
rs1851924	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1973802	0.83[EUR][1000 genomes]
rs2316043	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2680275	0.84[EUR][1000 genomes]
rs2680276	0.87[CEU][hapmap]
rs3772886	0.87[CEU][hapmap]
rs3772896	0.80[CHB][hapmap]
rs3849573	0.82[CEU][hapmap]
rs61156634	0.81[ASN][1000 genomes]
rs61540531	0.85[ASN][1000 genomes]
rs62267150	0.82[EUR][1000 genomes]
rs6765293	0.82[ASN][1000 genomes]
rs6768673	0.86[EUR][1000 genomes]
rs6776410	0.88[CEU][hapmap]
rs6785740	0.81[EUR][1000 genomes]
rs6791629	0.83[EUR][1000 genomes]
rs6791857	0.85[ASN][1000 genomes]
rs6798822	0.84[EUR][1000 genomes]
rs6804613	0.83[EUR][1000 genomes]
rs7611917	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623056	0.87[CEU][hapmap]
rs7635332	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644425	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9812141	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812505	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813371	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs9825400	0.82[EUR][1000 genomes]
rs9827558	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9831301	0.82[EUR][1000 genomes]
rs9835279	0.86[EUR][1000 genomes]
rs9838598	0.83[EUR][1000 genomes]
rs9847076	0.82[CEU][hapmap]
rs9851559	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs9870979	0.83[EUR][1000 genomes]
rs9871474	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81934200-81937000	Enhancers	NHDF-Ad	bronchial
2	chr3:81934200-81938000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:81934200-81938600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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