Variant report

Variant	rs6778732
Chromosome Location	chr3:142614390-142614391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142613521..142615754-chr3:142620913..142622791,2	K562	blood:
2	chr3:142606684..142610842-chr3:142612134..142615334,5	MCF-7	breast:
3	chr3:142606798..142610492-chr3:142610655..142614860,4	K562	blood:

Variant related genes	Relation type
ENSG00000163710	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1036691	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1457684	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1457685	0.81[EUR][1000 genomes]
rs1463559	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2125125	0.87[EUR][1000 genomes]
rs2581619	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2581620	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2581626	0.82[EUR][1000 genomes]
rs2581629	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2581635	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2581636	0.96[EUR][1000 genomes]
rs2581637	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2608070	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2608075	0.81[EUR][1000 genomes]
rs2608078	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2608079	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2619147	0.81[EUR][1000 genomes]
rs2707973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2707975	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2707977	0.81[EUR][1000 genomes]
rs2707983	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2707985	0.87[EUR][1000 genomes]
rs2707991	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2707996	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2707997	0.82[EUR][1000 genomes]
rs4683435	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7648216	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs893885	0.82[EUR][1000 genomes]
rs9824548	0.81[EUR][1000 genomes]
rs984593	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv437342	chr3:142605233-142622834	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv437343	chr3:142607487-142622834	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142608400-142615200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:142608600-142615200	Weak transcription	Hela-S3	cervix
3	chr3:142608600-142615400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:142608600-142617800	Weak transcription	Aorta	Aorta
5	chr3:142609600-142616800	Weak transcription	Adipose Nuclei	Adipose
6	chr3:142610000-142615200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:142613800-142615200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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