Variant report

Variant	rs67789293
Chromosome Location	chr18:30863942-30863943
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs1031391	0.82[ASN][1000 genomes]
rs1031392	0.82[ASN][1000 genomes]
rs11516170	0.81[ASN][1000 genomes]
rs1349553	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1451766	0.92[AFR][1000 genomes]
rs1551193	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1817044	0.81[ASN][1000 genomes]
rs2264190	0.82[ASN][1000 genomes]
rs2264192	0.81[ASN][1000 genomes]
rs2264193	0.82[ASN][1000 genomes]
rs2264229	0.82[ASN][1000 genomes]
rs2290318	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2290319	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2443094	0.81[ASN][1000 genomes]
rs2443739	0.82[ASN][1000 genomes]
rs2597933	0.82[ASN][1000 genomes]
rs2597934	0.82[ASN][1000 genomes]
rs2597935	0.82[ASN][1000 genomes]
rs2597936	0.82[ASN][1000 genomes]
rs2597937	0.82[ASN][1000 genomes]
rs2597938	0.82[ASN][1000 genomes]
rs2597939	0.81[ASN][1000 genomes]
rs2597940	0.82[ASN][1000 genomes]
rs2597941	0.82[ASN][1000 genomes]
rs2597943	0.82[ASN][1000 genomes]
rs2597944	0.82[ASN][1000 genomes]
rs2597945	0.82[ASN][1000 genomes]
rs2597946	0.82[ASN][1000 genomes]
rs2597947	0.82[ASN][1000 genomes]
rs2597949	0.82[ASN][1000 genomes]
rs2597950	0.82[ASN][1000 genomes]
rs2597951	0.82[ASN][1000 genomes]
rs2597952	0.82[ASN][1000 genomes]
rs2597955	0.82[ASN][1000 genomes]
rs2597957	0.82[ASN][1000 genomes]
rs2597959	0.82[ASN][1000 genomes]
rs2597960	0.82[ASN][1000 genomes]
rs2597963	0.82[ASN][1000 genomes]
rs2597965	0.82[ASN][1000 genomes]
rs2597966	0.82[ASN][1000 genomes]
rs2597967	0.82[ASN][1000 genomes]
rs2597968	0.82[ASN][1000 genomes]
rs2597969	0.82[ASN][1000 genomes]
rs2597970	0.82[ASN][1000 genomes]
rs2597971	0.82[ASN][1000 genomes]
rs2597972	0.82[ASN][1000 genomes]
rs2597973	0.82[ASN][1000 genomes]
rs2599395	0.82[ASN][1000 genomes]
rs2599405	0.82[ASN][1000 genomes]
rs2599411	0.82[ASN][1000 genomes]
rs2599414	0.82[ASN][1000 genomes]
rs2600332	0.82[ASN][1000 genomes]
rs2600333	0.81[ASN][1000 genomes]
rs2600334	0.82[ASN][1000 genomes]
rs2600335	0.82[ASN][1000 genomes]
rs2600336	0.82[ASN][1000 genomes]
rs2600338	0.82[ASN][1000 genomes]
rs2600339	0.82[ASN][1000 genomes]
rs2600341	0.82[ASN][1000 genomes]
rs2600342	0.82[ASN][1000 genomes]
rs2600344	0.82[ASN][1000 genomes]
rs2600345	0.82[ASN][1000 genomes]
rs2600346	0.82[ASN][1000 genomes]
rs2600348	0.82[ASN][1000 genomes]
rs2600349	0.82[ASN][1000 genomes]
rs2600366	0.82[ASN][1000 genomes]
rs2600367	0.82[ASN][1000 genomes]
rs2600368	0.82[ASN][1000 genomes]
rs2600369	0.82[ASN][1000 genomes]
rs2600371	0.82[ASN][1000 genomes]
rs2600372	0.82[ASN][1000 genomes]
rs2708333	0.82[ASN][1000 genomes]
rs2708335	0.82[ASN][1000 genomes]
rs2708337	0.82[ASN][1000 genomes]
rs2708338	0.82[ASN][1000 genomes]
rs2708339	0.82[ASN][1000 genomes]
rs2708342	0.82[ASN][1000 genomes]
rs2708352	0.82[ASN][1000 genomes]
rs2708353	0.82[ASN][1000 genomes]
rs2708354	0.82[ASN][1000 genomes]
rs2708356	0.82[ASN][1000 genomes]
rs2708358	0.82[ASN][1000 genomes]
rs2708359	0.82[ASN][1000 genomes]
rs2708361	0.82[ASN][1000 genomes]
rs2708362	0.82[ASN][1000 genomes]
rs2708363	0.82[ASN][1000 genomes]
rs2708364	0.82[ASN][1000 genomes]
rs2708365	0.82[ASN][1000 genomes]
rs2708366	0.81[ASN][1000 genomes]
rs28419178	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28866630	0.82[ASN][1000 genomes]
rs2923235	0.82[ASN][1000 genomes]
rs34274000	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34373518	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34413287	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34666803	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34708147	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34708266	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35097305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35128418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35159323	0.82[ASN][1000 genomes]
rs35376087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35470561	0.84[AFR][1000 genomes]
rs35746980	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36147394	0.82[ASN][1000 genomes]
rs36185691	0.82[ASN][1000 genomes]
rs3851590	0.92[AFR][1000 genomes]
rs4313662	0.82[ASN][1000 genomes]
rs4583064	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4763622	0.82[ASN][1000 genomes]
rs4763623	0.82[ASN][1000 genomes]
rs4763627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763628	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61912105	0.82[ASN][1000 genomes]
rs61912112	0.82[ASN][1000 genomes]
rs61912129	0.82[ASN][1000 genomes]
rs61912130	0.82[ASN][1000 genomes]
rs6488346	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66815414	0.84[AFR][1000 genomes]
rs66840927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67961444	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68186227	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71443637	0.85[AFR][1000 genomes]
rs7294336	0.81[ASN][1000 genomes]
rs7303105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7313683	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7316032	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7974964	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7980677	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv576640	chr18:30854237-30930418	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	esv3363260	chr18:30855003-30877581	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv576641	chr18:30856949-30930418	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1063958	chr18:30862717-30931616	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2762000	chr18:30862729-30931628	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30863000-30868400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:30863200-30868000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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