Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10154847	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10510536	0.90[JPT][hapmap]
rs11916059	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11926494	0.89[JPT][hapmap]
rs11927173	0.80[EUR][1000 genomes]
rs13314285	0.81[EUR][1000 genomes]
rs1495130	0.90[JPT][hapmap]
rs17012800	0.90[JPT][hapmap]
rs17012829	0.90[JPT][hapmap]
rs1908475	0.90[JPT][hapmap]
rs4078178	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56223303	0.84[ASN][1000 genomes]
rs58724157	0.80[EUR][1000 genomes]
rs60118170	0.80[EUR][1000 genomes]
rs6765801	0.80[EUR][1000 genomes]
rs6792370	0.90[JPT][hapmap]
rs7612463	0.89[JPT][hapmap]
rs7627380	0.90[JPT][hapmap]
rs9812056	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9827762	0.80[EUR][1000 genomes]
rs9831921	0.81[EUR][1000 genomes]
rs9847818	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Type 2 diabetes	23945395	GWAS catalog

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23198400-23199400	Enhancers	Fetal Lung	lung
2	chr3:23198400-23199400	Enhancers	Rectal Smooth Muscle	rectum

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