Variant report

Variant	rs6781421
Chromosome Location	chr3:81935241-81935242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17019195	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17019216	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17019314	1.00[AMR][1000 genomes]
rs17019315	1.00[AMR][1000 genomes]
rs17019334	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3772888	0.91[YRI][hapmap]
rs61540531	0.82[AFR][1000 genomes]
rs6767507	1.00[AMR][1000 genomes]
rs6771364	1.00[AMR][1000 genomes]
rs6791857	0.82[AFR][1000 genomes]
rs7645838	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81934200-81937000	Enhancers	NHDF-Ad	bronchial
2	chr3:81934200-81938000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:81934200-81938600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:81935000-81937800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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