Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12326934	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943055	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16943181	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28433105	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3889349	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3889350	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55976171	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56403102	0.85[EUR][1000 genomes]
rs57465464	0.86[AMR][1000 genomes]
rs58569620	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60167332	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61089873	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61998173	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6508460	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6508461	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6508463	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7227120	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7232288	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7237212	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7238255	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7243196	0.86[AMR][1000 genomes]
rs72880575	0.85[EUR][1000 genomes]
rs8085829	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8086337	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8088793	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8091201	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9807634	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24537400-24545000	Weak transcription	Brain Anterior Caudate	brain
2	chr18:24537600-24543600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr18:24537800-24541000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr18:24538600-24543000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr18:24538800-24540800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr18:24539000-24539400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr18:24539000-24541000	Weak transcription	Ovary	ovary

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