Variant report

Variant	rs67867077
Chromosome Location	chr4:87643746-87643747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87592727..87594779-chr4:87641743..87643865,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10016074	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10019950	0.92[ASN][1000 genomes]
rs1021101	0.81[EUR][1000 genomes]
rs1035191	0.88[ASN][1000 genomes]
rs10516778	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11561681	0.82[AMR][1000 genomes]
rs12331502	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12503659	0.91[ASN][1000 genomes]
rs12510802	0.88[ASN][1000 genomes]
rs13113689	0.87[ASN][1000 genomes]
rs1420621	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17012072	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17420607	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17420966	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17454154	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17454662	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17694112	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2006842	0.88[ASN][1000 genomes]
rs2054592	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2054593	0.92[ASN][1000 genomes]
rs2230600	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2287147	0.82[AMR][1000 genomes]
rs3775236	0.91[ASN][1000 genomes]
rs3775238	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775239	0.95[ASN][1000 genomes]
rs4263359	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4693150	0.80[AMR][1000 genomes]
rs4693780	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4693784	0.82[AMR][1000 genomes]
rs55670248	0.82[AMR][1000 genomes]
rs57954319	0.87[ASN][1000 genomes]
rs72665791	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72665795	0.80[AMR][1000 genomes]
rs969734	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2757071	chr4:87417291-87689533	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759264	chr4:87417291-87689533	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv879522	chr4:87473776-87644842	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv830001	chr4:87585278-87748643	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv508296	chr4:87636350-87667372	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87574600-87644400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:87579400-87644400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:87592400-87656400	Weak transcription	Adipose Nuclei	Adipose
4	chr4:87594400-87659800	Weak transcription	Ovary	ovary
5	chr4:87595200-87651200	Weak transcription	Fetal Stomach	stomach
6	chr4:87625200-87651600	Weak transcription	Esophagus	oesophagus
7	chr4:87631200-87712200	Weak transcription	Aorta	Aorta
8	chr4:87635200-87737400	Weak transcription	Fetal Brain Male	brain
9	chr4:87635400-87648200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:87635600-87651600	Weak transcription	Lung	lung
11	chr4:87636400-87644600	Weak transcription	Fetal Intestine Small	intestine
12	chr4:87636400-87683800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:87637200-87661200	Weak transcription	Pancreas	Pancrea
14	chr4:87638600-87644400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:87639200-87688000	Weak transcription	Fetal Intestine Large	intestine
16	chr4:87639400-87739200	Weak transcription	A549	lung
17	chr4:87639600-87644400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:87639600-87644400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:87640200-87652000	Weak transcription	HMEC	breast
20	chr4:87641600-87660400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:87641800-87648400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:87641800-87683400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr4:87642000-87644200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:87642000-87644400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:87642000-87644400	Weak transcription	NHEK	skin
26	chr4:87642000-87651200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:87642000-87651600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr4:87642000-87651600	Weak transcription	Gastric	stomach
29	chr4:87642000-87655200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:87642000-87661000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr4:87642200-87692600	Weak transcription	NH-A	brain
32	chr4:87642400-87648400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:87642400-87735800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr4:87642600-87644000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr4:87642600-87644000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:87642600-87644400	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr4:87642600-87644400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr4:87642600-87650800	Weak transcription	Brain Hippocampus Middle	brain
39	chr4:87642600-87661000	Weak transcription	Brain Cingulate Gyrus	brain
40	chr4:87642600-87661200	Weak transcription	Brain Germinal Matrix	brain
41	chr4:87642600-87692400	Weak transcription	Colon Smooth Muscle	Colon
42	chr4:87642600-87697600	Weak transcription	Brain Angular Gyrus	brain
43	chr4:87642600-87719200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr4:87642800-87645200	Weak transcription	Fetal Heart	heart
45	chr4:87642800-87645200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr4:87642800-87652200	Weak transcription	Brain Substantia Nigra	brain
47	chr4:87643000-87644400	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr4:87643000-87644600	Strong transcription	Fetal Lung	lung
49	chr4:87643000-87645400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:87643000-87645400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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