Variant report

Variant	rs6788023
Chromosome Location	chr3:164225656-164225657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10513614	1.00[AMR][1000 genomes]
rs16848122	1.00[AMR][1000 genomes]
rs16848202	1.00[AMR][1000 genomes]
rs55724803	1.00[AMR][1000 genomes]
rs58174786	1.00[AMR][1000 genomes]
rs60848629	1.00[AMR][1000 genomes]
rs60892081	1.00[AMR][1000 genomes]
rs61447731	1.00[AMR][1000 genomes]
rs61509155	1.00[AMR][1000 genomes]
rs6769265	1.00[AMR][1000 genomes]
rs6782244	1.00[AMR][1000 genomes]
rs6802643	1.00[AMR][1000 genomes]
rs73018822	1.00[AMR][1000 genomes]
rs73024847	1.00[AMR][1000 genomes]
rs73030874	1.00[AMR][1000 genomes]
rs73033947	1.00[AMR][1000 genomes]
rs73040776	1.00[AMR][1000 genomes]
rs73877047	1.00[AMR][1000 genomes]
rs73877049	1.00[AMR][1000 genomes]
rs73877058	1.00[AMR][1000 genomes]
rs7616947	1.00[AMR][1000 genomes]
rs7617732	1.00[AMR][1000 genomes]
rs7641679	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009069	chr3:163787128-164323219	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1010490	chr3:163961100-164399225	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv497973	chr3:163970658-164370204	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1014815	chr3:164007081-164359622	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1006002	chr3:164021906-164653572	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv998340	chr3:164047951-164325380	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv999285	chr3:164133483-164326560	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv536791	chr3:164133483-164326560	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2763323	chr3:164189618-164243301	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv877897	chr3:164207439-164330094	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv3447980	chr3:164224258-164228256	Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv515852	chr3:164225150-164253223	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv592445	chr3:164225150-164253223	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:164225600-164226000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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