Variant report

Variant	rs6788419
Chromosome Location	chr3:53656049-53656050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53616524..53618265-chr3:53654057..53656275,2	K562	blood:
2	chr3:53620892..53622779-chr3:53653640..53656447,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs17053233	1.00[GIH][hapmap]
rs17053285	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17053295	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2292918	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2612020	0.95[ASN][1000 genomes]
rs2633708	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2633709	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2680657	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2680659	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2946522	1.00[JPT][hapmap]
rs36003262	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774459	1.00[EUR][1000 genomes]
rs3774467	0.82[CHB][hapmap]
rs3774483	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs3774484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774485	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774487	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs3774488	1.00[JPT][hapmap]
rs3774490	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs3774499	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774500	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774503	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs3774513	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774521	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3774524	0.86[ASN][1000 genomes]
rs3821853	1.00[JPT][hapmap]
rs55999888	0.93[ASN][1000 genomes]
rs715781	1.00[EUR][1000 genomes]
rs72967859	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72978531	0.95[ASN][1000 genomes]
rs73840122	1.00[EUR][1000 genomes]
rs898412	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs898413	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs898414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9311511	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9848595	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53658400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:53652800-53658400	Weak transcription	Lung	lung
3	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
4	chr3:53653200-53660400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:53654000-53657800	Weak transcription	Fetal Intestine Large	intestine
6	chr3:53655400-53656800	Weak transcription	Brain Germinal Matrix	brain

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