Variant report

Variant	rs6788584
Chromosome Location	chr3:144735828-144735829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10804698	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11712518	0.85[EUR][1000 genomes]
rs11714435	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11714725	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12695792	0.92[EUR][1000 genomes]
rs4254701	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4362764	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4381987	0.84[AMR][1000 genomes]
rs4405957	0.84[AMR][1000 genomes]
rs4426713	0.84[AMR][1000 genomes]
rs4681642	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61294843	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6440286	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6440289	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6440290	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6440311	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6765625	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6765683	0.85[EUR][1000 genomes]
rs6778480	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6778488	0.85[EUR][1000 genomes]
rs6782683	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6786747	0.92[EUR][1000 genomes]
rs6809974	0.90[EUR][1000 genomes]
rs7427359	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7427634	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7427709	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7619338	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7623306	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7624601	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7646371	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9289689	0.90[EUR][1000 genomes]
rs9289690	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9827899	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9843234	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9849958	0.85[EUR][1000 genomes]
rs9859874	0.90[EUR][1000 genomes]
rs9863285	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9865339	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9877095	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9917709	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1005754	chr3:144529346-144984363	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1004792	chr3:144658885-145191801	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv877574	chr3:144681790-144803812	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv877575	chr3:144701909-144792985	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv877576	chr3:144701909-144803812	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877577	chr3:144701909-144864974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv877578	chr3:144734068-144843921	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144730200-144736400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:144734800-144736600	Weak transcription	NHEK	skin
3	chr3:144735400-144736200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:144735400-144736600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:144735400-144736800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:144735400-144736800	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links