Variant report

Variant	rs6788855
Chromosome Location	chr3:164044726-164044727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1067557	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1067558	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1067560	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1085940	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1086081	0.87[ASN][1000 genomes]
rs1086082	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1086089	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1090613	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11928422	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13068095	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13073971	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13096780	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13098760	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321543	0.94[ASN][1000 genomes]
rs1321546	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1321547	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1321548	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1584558	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1667803	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1796567	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1922252	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2596685	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34303227	0.84[ASN][1000 genomes]
rs471175	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs472822	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs484180	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs491306	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs491615	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs492756	0.93[ASN][1000 genomes]
rs495900	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs522210	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs549745	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs562255	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs563509	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56375007	0.94[ASN][1000 genomes]
rs575508	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs580597	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs591922	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs594138	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs594986	0.94[ASN][1000 genomes]
rs595500	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs600021	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs605248	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs605582	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs613294	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs622209	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs625362	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs647169	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs661523	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6804290	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs680957	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs681497	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs682502	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs687728	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs693261	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs710851	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs710853	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs710854	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs710855	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs710857	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs710858	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs710859	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7614139	0.85[AFR][1000 genomes]
rs7615692	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616218	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625437	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7629729	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7634396	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7637480	0.82[ASN][1000 genomes]
rs788892	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs788893	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs788895	0.83[ASN][1000 genomes]
rs788897	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs788898	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs788899	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs788900	0.93[ASN][1000 genomes]
rs788901	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs788902	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs788903	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs789312	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs789313	0.87[ASN][1000 genomes]
rs789316	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9816406	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9825573	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9878219	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877820	chr3:163557163-164167085	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv877825	chr3:163620918-164126802	Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv877833	chr3:163761825-164109377	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1009069	chr3:163787128-164323219	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv877836	chr3:163795964-164109377	Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv877839	chr3:163823186-164126802	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv592435	chr3:163832166-164138131	Strong transcription Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv877840	chr3:163832988-164200220	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv877843	chr3:163835270-164126802	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
10	nsv877847	chr3:163849580-164126802	ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
11	nsv877849	chr3:163857437-164092986	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
12	nsv877852	chr3:163861355-164126802	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
13	nsv877857	chr3:163864862-164046501	Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
14	nsv877858	chr3:163864862-164126802	Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
15	nsv592437	chr3:163885473-164095655	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
16	nsv877864	chr3:163902187-164046501	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv877865	chr3:163902187-164126802	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv877866	chr3:163914791-164046501	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv1831812	chr3:163914791-164048381	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv877867	chr3:163914791-164088664	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv877881	chr3:163922738-164076198	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv877886	chr3:163941553-164126802	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv877887	chr3:163941553-164138131	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv592440	chr3:163951886-164114553	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv1010490	chr3:163961100-164399225	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
26	nsv1004944	chr3:163968837-164110498	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv536790	chr3:163968837-164110498	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv497973	chr3:163970658-164370204	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
29	nsv1003471	chr3:163976235-164094643	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	nsv1008208	chr3:163978650-164088858	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
31	nsv877890	chr3:163989075-164114553	Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
32	nsv877891	chr3:163989075-164126802	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
33	nsv877892	chr3:163989075-164167085	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
34	nsv1007325	chr3:163998269-164094643	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
35	nsv1014815	chr3:164007081-164359622	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
36	nsv877893	chr3:164018044-164202045	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
37	esv1843213	chr3:164018044-164209573	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
38	nsv1006002	chr3:164021906-164653572	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
39	nsv877894	chr3:164026338-164109377	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:164039200-164050000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:164039400-164048800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:164043600-164045200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:164043800-164044800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:164043800-164045200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:164044200-164045000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:164044400-164044800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:164044400-164045000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:164044400-164045000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:164044600-164044800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:164044600-164044800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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