Variant report

Variant	rs6789527
Chromosome Location	chr3:121346116-121346117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34740909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61750878	1.00[EUR][1000 genomes]
rs6438648	1.00[EUR][1000 genomes]
rs7627703	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv999335	chr3:121100283-121408766	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1007522	chr3:121200563-121374051	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv999349	chr3:121253990-121360206	Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv998740	chr3:121289499-121390271	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121341800-121348400	Weak transcription	Spleen	Spleen
2	chr3:121342000-121350000	Weak transcription	Liver	Liver
3	chr3:121342200-121346200	Weak transcription	Right Ventricle	heart
4	chr3:121343200-121348400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:121343400-121348000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr3:121343600-121346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:121343600-121348400	Weak transcription	Psoas Muscle	Psoas
8	chr3:121343800-121347200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:121343800-121347600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr3:121343800-121353000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:121344000-121346200	Weak transcription	Right Atrium	heart
12	chr3:121344400-121347200	Weak transcription	Fetal Heart	heart
13	chr3:121344800-121347600	Weak transcription	Fetal Thymus	thymus
14	chr3:121345000-121346400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
15	chr3:121345000-121347800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:121345000-121349400	Strong transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:121345600-121347200	Weak transcription	Primary B cells from cord blood	blood
18	chr3:121345600-121347400	Genic enhancers	Left Ventricle	heart
19	chr3:121345600-121348000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:121345600-121349600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:121345600-121376800	Weak transcription	Esophagus	oesophagus
22	chr3:121345800-121346400	Enhancers	H9 Cell Line	embryonic stem cell
23	chr3:121345800-121347600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr3:121345800-121347600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:121345800-121348600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:121345800-121350400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:121346000-121346400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr3:121346000-121346400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr3:121346000-121346400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr3:121346000-121347600	Weak transcription	Primary T cells from cord blood	blood
31	chr3:121346000-121348800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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